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Gene : AT5G08390 A. thaliana

DB identifier  ? AT5G08390 Secondary Identifier  ? locus:2150788
Brief Description  Transducin/WD40 repeat-like superfamily protein
TAIR Computational Description  Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
TAIR Curator Summary  One of four katanin p80 subunits. Involved in targeting of katanin complex to crossover and branch points to properly sever microtubules.
TAIR Short Description  Transducin/WD40 repeat-like superfamily protein
TAIR Aliases  KTN80.3

0 Gene Rifs

1 Organism

8 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 6315  
Location: Chr5:2700959-2707273

Gene models - AT5G08390 AT5G08390

? Gene models

Transcripts: 1  Exons: 19  Introns: 18 

Overlapping Features

? Genome features that overlap coordinates of this Gene

20 Child Features

0 Cross References

0 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
KTN83_ARATH function May participate in a complex which severs microtubules in an ATP-dependent manner (By similarity). Microtubule severing may promote rapid reorganization of cellular microtubule arrays (By similarity). Confers precision to microtubule (MT) severing by specific targeting of KTN1 to MT cleavage sites such as crossover or branching nucleation sites (PubMed:28978669). Together with other KTN80s, regulates cell elongation by modulating MT organization (PubMed:28978669).
KTN83_ARATH similarity Belongs to the WD repeat KATNB1 family.
KTN83_ARATH subcellular location Present in dynamic discrete particles specifically localized to microtubule (MT) crossovers and branching nucleation sites.
KTN83_ARATH tissue specificity Expressed in siliques, flowers, leaves, stems and roots.

1 Proteins

Function

Gene Ontology

cellular component
microtubule cytoskeleton  ? ECO  
Cul4-RING E3 ubiquitin ligase complex  ? ECO  
microtubule  ? ECO  
cytoplasm  ? ECO  
katanin complex  ? ECO  
molecular function
microtubule binding  ? ECO  
biological process
microtubule severing  ? ECO  
regulation of unidimensional cell growth  ? ECO  

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

6 Data Sets