External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Gene models -
Gene models
No results
Overlapping Features
Genome features that overlap coordinates of this Pseudogene
CDSs: 7, Exons: 7, Five Prime UTR: 1, Gene: 1, mRNA: 1, Pseudogenic Exons: 17, Pseudogenic Transcripts: 6, Three Prime UTR: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G04870:CDS:7 | 114 | Chr5: 1417015-1417128 | Arabidopsis thaliana |
AT5G04870:CDS:6 | 225 | Chr5: 1417480-1417704 | Arabidopsis thaliana |
AT5G04870:CDS:5 | 168 | Chr5: 1417856-1418023 | Arabidopsis thaliana |
AT5G04870:CDS:4 | 116 | Chr5: 1418179-1418294 | Arabidopsis thaliana |
AT5G04870:CDS:3 | 153 | Chr5: 1418456-1418608 | Arabidopsis thaliana |
AT5G04870:CDS:2 | 144 | Chr5: 1418704-1418847 | Arabidopsis thaliana |
AT5G04870:CDS:1 | 913 | Chr5: 1418965-1419877 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G04870:exon:7 | 565 | Chr5: 1416564-1417128 | Arabidopsis thaliana |
AT5G04870:exon:6 | 225 | Chr5: 1417480-1417704 | Arabidopsis thaliana |
AT5G04870:exon:5 | 168 | Chr5: 1417856-1418023 | Arabidopsis thaliana |
AT5G04870:exon:4 | 116 | Chr5: 1418179-1418294 | Arabidopsis thaliana |
AT5G04870:exon:3 | 153 | Chr5: 1418456-1418608 | Arabidopsis thaliana |
AT5G04870:exon:2 | 144 | Chr5: 1418704-1418847 | Arabidopsis thaliana |
AT5G04870:exon:1 | 1590 | Chr5: 1418965-1420554 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G04870:five_prime_UTR:1 | 677 | Chr5: 1419878-1420554 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G04870 | locus:2175503 | CPK1 | calcium dependent protein kinase 1 | 3991 | Chr5: 1416564-1420554 | A. thaliana | calcium dependent protein kinase 1;(source:Araport11) | A calcium-dependent protein kinase that can phosphorylate phenylalanine ammonia lyase (PAL), a key enzyme in pathogen defense.Phosphorylates, in vivo, the transcription factor ORE1, a master regulator of senescence. | calcium dependent protein kinase 1 | ATCPK1, CPK1 |
Pseudogenic Exons
Pseudogenic Transcripts
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G04880.1 | 5273 | Chr5: 1416585-1421857 |
AT5G04880.3 | 1251 | Chr5: 1420607-1421857 |
AT5G04880.2 | 1708 | Chr5: 1420607-1422314 |
AT5G04880.4 | 1708 | Chr5: 1420607-1422314 |
AT5G04880.6 | 1682 | Chr5: 1420630-1422311 |
AT5G04880.5 | 1682 | Chr5: 1420630-1422311 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G04870:three_prime_UTR:1 | 451 | Chr5: 1416564-1417014 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
---|
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...