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Gene : BTR1L A. thaliana

DB identifier  ? AT5G04430 Secondary Identifier  ? locus:2184362
Name  ? binding to TOMV RNA 1L (long form) Brief Description  binding to TOMV RNA 1L (long form)
TAIR Computational Description  binding to TOMV RNA 1L (long form);(source:Araport11)
TAIR Curator Summary  Gene model AT5G04430.1 produces active protein. (BTS1S). Binds to ToMV genomic RNA and prevents viral multiplication.
TAIR Short Description  binding to TOMV RNA 1L (long form)
TAIR Aliases  AtKH22, BTR1, BTR1L, BTR1S

1 Gene Rifs

1 Organism

18 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 3706  
Location: Chr5:1250248-1253953 reverse strand

Gene models - BTR1L AT5G04430

? Gene models

Transcripts: 2  Exons: 18  Introns: 16 

Overlapping Features

? Genome features that overlap coordinates of this Gene

12 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
BTR1_ARATH BTR1_ARATH-2 function Negative regulator of tomato mosaic virus (ToMV) multiplication, but has no effect on the multiplication of cucumber mosaic virus (CMV). Limits the spreading of the virus (PubMed:18762309). Isoform BTR1S: binds preferentially and directly to the 5'terminal region of ToMV genomic RNA, and affects the efficiency of translation rather than mRNA stability (PubMed:18762309).
BTR1_ARATH BTR1_ARATH-2 tissue specificity Expressed in leaves, stems and siliques.

3 Proteins

Function

Gene Ontology

cellular component
cytosol  ? ECO  
plasma membrane  ? ECO  
molecular function
mRNA binding  ? ECO  
single-stranded RNA binding  ? ECO  
biological process
RNA splicing  ? ECO  
regulation by virus of viral protein levels in host cell  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

9 Data Sets