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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G04320:CDS:1 | 57 | Chr5: 1209613-1209669 | Arabidopsis thaliana |
AT5G04320:CDS:2 | 90 | Chr5: 1209746-1209835 | Arabidopsis thaliana |
AT5G04320:CDS:4 | 38 | Chr5: 1209923-1209960 | Arabidopsis thaliana |
AT5G04320:CDS:6 | 109 | Chr5: 1210061-1210169 | Arabidopsis thaliana |
AT5G04320:CDS:7 | 24 | Chr5: 1210278-1210301 | Arabidopsis thaliana |
AT5G04320:CDS:8 | 66 | Chr5: 1210405-1210470 | Arabidopsis thaliana |
AT5G04320:CDS:9 | 42 | Chr5: 1210557-1210598 | Arabidopsis thaliana |
AT5G04320:CDS:10 | 97 | Chr5: 1210698-1210794 | Arabidopsis thaliana |
AT5G04320:CDS:11 | 67 | Chr5: 1210869-1210935 | Arabidopsis thaliana |
AT5G04320:CDS:12 | 177 | Chr5: 1211025-1211201 | Arabidopsis thaliana |
AT5G04320:CDS:13 | 105 | Chr5: 1211320-1211424 | Arabidopsis thaliana |
AT5G04320:CDS:14 | 105 | Chr5: 1211528-1211632 | Arabidopsis thaliana |
AT5G04320:CDS:15 | 78 | Chr5: 1211738-1211815 | Arabidopsis thaliana |
AT5G04320:CDS:16 | 96 | Chr5: 1211924-1212019 | Arabidopsis thaliana |
AT5G04320:CDS:17 | 262 | Chr5: 1212115-1212376 | Arabidopsis thaliana |
AT5G04320:CDS:1.1 | 57 | Chr5: 1209613-1209669 | Arabidopsis thaliana |
AT5G04320:CDS:2.1 | 90 | Chr5: 1209746-1209835 | Arabidopsis thaliana |
AT5G04320:CDS:4.1 | 38 | Chr5: 1209923-1209960 | Arabidopsis thaliana |
AT5G04320:CDS:6.1 | 109 | Chr5: 1210061-1210169 | Arabidopsis thaliana |
AT5G04320:CDS:7.1 | 24 | Chr5: 1210278-1210301 | Arabidopsis thaliana |
AT5G04320:CDS:8.1 | 66 | Chr5: 1210405-1210470 | Arabidopsis thaliana |
AT5G04320:CDS:9.1 | 42 | Chr5: 1210557-1210598 | Arabidopsis thaliana |
AT5G04320:CDS:10.1 | 97 | Chr5: 1210698-1210794 | Arabidopsis thaliana |
AT5G04320:CDS:11.1 | 67 | Chr5: 1210869-1210935 | Arabidopsis thaliana |
AT5G04320:CDS:12.1 | 177 | Chr5: 1211025-1211201 | Arabidopsis thaliana |
AT5G04320:CDS:13.1 | 105 | Chr5: 1211320-1211424 | Arabidopsis thaliana |
AT5G04320:CDS:14.1 | 105 | Chr5: 1211528-1211632 | Arabidopsis thaliana |
AT5G04320:CDS:15.1 | 78 | Chr5: 1211738-1211815 | Arabidopsis thaliana |
AT5G04320:CDS:16.1 | 96 | Chr5: 1211924-1212019 | Arabidopsis thaliana |
AT5G04320:CDS:17.1 | 262 | Chr5: 1212115-1212376 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G04320:exon:1 | 132 | Chr5: 1209197-1209328 | Arabidopsis thaliana |
AT5G04320:exon:2 | 149 | Chr5: 1209197-1209345 | Arabidopsis thaliana |
AT5G04320:exon:5 | 46 | Chr5: 1209465-1209510 | Arabidopsis thaliana |
AT5G04320:exon:8 | 90 | Chr5: 1209746-1209835 | Arabidopsis thaliana |
AT5G04320:exon:3 | 314 | Chr5: 1209197-1209510 | Arabidopsis thaliana |
AT5G04320:exon:7 | 239 | Chr5: 1209597-1209835 | Arabidopsis thaliana |
AT5G04320:exon:10 | 38 | Chr5: 1209923-1209960 | Arabidopsis thaliana |
AT5G04320:exon:4 | 313 | Chr5: 1209198-1209510 | Arabidopsis thaliana |
AT5G04320:exon:6 | 73 | Chr5: 1209597-1209669 | Arabidopsis thaliana |
AT5G04320:exon:9 | 215 | Chr5: 1209746-1209960 | Arabidopsis thaliana |
AT5G04320:exon:11 | 109 | Chr5: 1210061-1210169 | Arabidopsis thaliana |
AT5G04320:exon:12 | 24 | Chr5: 1210278-1210301 | Arabidopsis thaliana |
AT5G04320:exon:13 | 66 | Chr5: 1210405-1210470 | Arabidopsis thaliana |
AT5G04320:exon:14 | 42 | Chr5: 1210557-1210598 | Arabidopsis thaliana |
AT5G04320:exon:15 | 97 | Chr5: 1210698-1210794 | Arabidopsis thaliana |
AT5G04320:exon:16 | 67 | Chr5: 1210869-1210935 | Arabidopsis thaliana |
AT5G04320:exon:17 | 177 | Chr5: 1211025-1211201 | Arabidopsis thaliana |
AT5G04320:exon:18 | 105 | Chr5: 1211320-1211424 | Arabidopsis thaliana |
AT5G04320:exon:19 | 105 | Chr5: 1211528-1211632 | Arabidopsis thaliana |
AT5G04320:exon:20 | 78 | Chr5: 1211738-1211815 | Arabidopsis thaliana |
AT5G04320:exon:21 | 96 | Chr5: 1211924-1212019 | Arabidopsis thaliana |
AT5G04320:exon:22 | 464 | Chr5: 1212115-1212578 | Arabidopsis thaliana |
AT5G04330:exon:2 | 796 | Chr5: 1212532-1213327 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G04320:five_prime_UTR:1 | 132 | Chr5: 1209197-1209328 | Arabidopsis thaliana |
AT5G04320:five_prime_UTR:2 | 149 | Chr5: 1209197-1209345 | Arabidopsis thaliana |
AT5G04320:five_prime_UTR:5 | 46 | Chr5: 1209465-1209510 | Arabidopsis thaliana |
AT5G04320:five_prime_UTR:6 | 16 | Chr5: 1209597-1209612 | Arabidopsis thaliana |
AT5G04320:five_prime_UTR:3 | 314 | Chr5: 1209197-1209510 | Arabidopsis thaliana |
AT5G04320:five_prime_UTR:8 | 164 | Chr5: 1209597-1209760 | Arabidopsis thaliana |
AT5G04320:five_prime_UTR:4 | 313 | Chr5: 1209198-1209510 | Arabidopsis thaliana |
AT5G04320:five_prime_UTR:7 | 73 | Chr5: 1209597-1209669 | Arabidopsis thaliana |
AT5G04320:five_prime_UTR:9 | 183 | Chr5: 1209746-1209928 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G04330 | locus:2179959 | CYP84A4 | CYTOCHROME P450 84A4 | 1908 | Chr5: 1212532-1214439 | A. thaliana | Cytochrome P450 superfamily protein;(source:Araport11) | NULL | Cytochrome P450 superfamily protein | CYP84A4 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G04320.5 | 1809 | Chr5: 1209197-1212578 |
AT5G04320.2 | 1945 | Chr5: 1209197-1212578 |
AT5G04320.4 | 1826 | Chr5: 1209197-1212578 |
AT5G04320.3 | 2021 | Chr5: 1209197-1212578 |
AT5G04320.1 | 2031 | Chr5: 1209198-1212578 |
AT5G04330.1 | 1831 | Chr5: 1212532-1214439 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G04320:three_prime_UTR:1 | 202 | Chr5: 1212377-1212578 | Arabidopsis thaliana |
AT5G04330:three_prime_UTR:1 | 163 | Chr5: 1212532-1212694 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
SGO2_ARATH SGO2_ARATH-2 | function | Dispensable for both meiotic and mitotic cell cycle progression (PubMed:23884434, PubMed:24206843). Required with SGO1 for full protection of centromeric cohesion during anaphase I (PubMed:24206843). Required to prevent precocious release of pericentromeric cohesins during meiosis (PubMed:24206843). Acts redundantly to SGO1 (PubMed:24506176). |
A0A1P8BFE9_ARATH SGO2_ARATH SGO2_ARATH-2 | similarity | Belongs to the shugoshin family. |
Function
Gene Ontology
cellular component | |
---|---|
nucleus | ECO |
chromosome, centromeric region | ECO |
molecular function | |
No terms in this category. | |
biological process | |
maintenance of meiotic sister chromatid cohesion | ECO |
meiotic sister chromatid segregation | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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