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Gene : KTF1 A. thaliana

DB identifier  ? AT5G04290 Secondary Identifier  ? locus:2179979
Name  ? kow domain-containing transcription factor 1 Brief Description  kow domain-containing transcription factor 1
TAIR Computational Description  kow domain-containing transcription factor 1;(source:Araport11)
TAIR Curator Summary  Encodes SPT5-Like, a member of the nuclear SPT5 (Suppressor of Ty insertion 5) RNA polymerase (RNAP) elongation factor family that is characterized by the presence of a carboxy-terminal extension with more than 40 WG/GW motifs. Interacts with AGO4. Required for RNA-directed DNA methylation. The mRNA is cell-to-cell mobile.
TAIR Short Description  kow domain-containing transcription factor 1
TAIR Aliases  KTF1, SPT5L

1 Gene Rifs

1 Organism

9 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 6968  
Location: Chr5:1195969-1202936

Gene models - KTF1 AT5G04290

? Gene models

Transcripts: 2  Exons: 37  Introns: 35 

Overlapping Features

? Genome features that overlap coordinates of this Gene

23 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
RDM3_ARATH function Effector of RNA-directed DNA methylation (RdDM) triggered by small interfering RNAs (siRNAs, 24-nt RNAs). Functions as an adapter protein that binds scaffold transcripts generated by polymerase V and recruits AGO4 and AGO4-bound siRNAs to form an RdDM effector complex (PubMed:19343051, PubMed:19410546). Promotes the expression of 24-nt RNAs (PubMed:19343051). Required for the initial establishment of DNA methylation (PubMed:21150311). Together with AGO4, required for transcriptional gene silencing (TGS) by DNA methylation and repressive histone modifications (H3K9me2) of several chromatin loci (PubMed:21738482).
RDM3_ARATH subcellular location Localized at punctate nuclear foci. Colocalizes with AGO4 and polymerase V in the nucleoplasm.

2 Proteins

Function

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

9 Data Sets