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Gene : NAKR1 A. thaliana

DB identifier  ? AT5G02600 Secondary Identifier  ? locus:2181718
Name  ? SODIUM POTASSIUM ROOT DEFECTIVE 1 Brief Description  Heavy metal transport/detoxification superfamily protein
TAIR Computational Description  Heavy metal transport/detoxification superfamily protein;(source:Araport11)
TAIR Curator Summary  Encodes a phloem mobile metal binding protein necessary for phloem function and root meristem maintenance.
TAIR Short Description  Heavy metal transport/detoxification superfamily protein
TAIR Aliases  AtHMP42, NAKR1, NPCC6

2 Gene Rifs

1 Organism

12 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2792  
Location: Chr5:584162-586953 reverse strand

Gene models - NAKR1 AT5G02600

? Gene models

Transcripts: 3  Exons: 9  Introns: 6 

Overlapping Features

? Genome features that overlap coordinates of this Gene

10 Child Features

1 Cross References

0 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
NAKR1_ARATH developmental stage Start to be expressed 1 day after germination (DAG) in the vascular tissue at the root-hypocotyl junction.
NAKR1_ARATH function Required for root meristem maintenance after germination (PubMed:21193571). Involved in phloem translocation, starch accumulation and flowering (PubMed:21193571). Promotes flowering in the photoperiod pathway (PubMed:27255839). Regulates long-distance movement of FT from leaves to the shoot apex through the phloem stream (PubMed:27255839).
NAKR1_ARATH subcellular location Mobile through plasmodesmata.
NAKR1_ARATH tissue specificity Expressed in vascular tissues of cotyledons, rosette leaves and roots in developing seedlings before and during the floral transition (PubMed:27255839). Expressed specifically in the phloem companion cells (PubMed:18354040, PubMed:21193571). Not detected in embryos or seeds (PubMed:21193571). Not detected in the vegetative shoot apex (PubMed:27255839).

2 Proteins

Function

Gene Ontology

cellular component
endoplasmic reticulum  ? ECO  
nucleus  ? ECO  
cytoplasm  ? ECO  
molecular function
metal ion binding  ? ECO  
biological process
root morphogenesis  ? ECO  
phloem transport  ? ECO  
sodium ion homeostasis  ? ECO  
flower development  ? ECO  

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

8 Data Sets