help  | faq  | software  | BAR
Hide

Oops!

Error: 403

Gene : AT5G01780 A. thaliana

DB identifier  ? AT5G01780 Secondary Identifier  ? locus:2181012
Brief Description  2-oxoglutarate-dependent dioxygenase family protein
TAIR Computational Description  2-oxoglutarate-dependent dioxygenase family protein;(source:Araport11)
TAIR Curator Summary  NULL
TAIR Short Description  2-oxoglutarate-dependent dioxygenase family protein

0 Gene Rifs

1 Organism

7 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2182  
Location: Chr5:302098-304279 reverse strand

Gene models - AT5G01780 AT5G01780

? Gene models

Transcripts: 5  Exons: 18  Introns: 13 

Overlapping Features

? Genome features that overlap coordinates of this Gene

15 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
AKB1D_ARATH AKB1D_ARATH-3 AKB1D_ARATH-2 function Dioxygenase that catalyzes DNA N(6)-methyladenine (6 mA) demethylation to modulate gene expression and regulate seed germination (PubMed:38432357).
AKB1D_ARATH AKB1D_ARATH-3 AKB1D_ARATH-2 F4KAV1_ARATH A0A1P8BHF6_ARATH A0A1P8BHF5_ARATH similarity Belongs to the alkB family.
AKB1D_ARATH AKB1D_ARATH-3 AKB1D_ARATH-2 tissue specificity Expressed at low levels in roots, seedlings and rosette leaves, but barely in cauline leaves, stems, siliques and flowers.

6 Proteins

Function

Gene Ontology

cellular component
nucleus  ? ECO  
cytoplasm  ? ECO  
molecular function
dioxygenase activity  ? ECO  
DNA N6-methyladenine demethylase activity  ? ECO  
metal ion binding  ? ECO  
biological process
DNA repair  ? ECO  
regulation of seed germination  ? ECO  

Interactions

Interaction Network

Show the following interaction types:
Reset view
Show in table format
Export graph

Click on a gene to get more info about it.

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

5 Data Sets