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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNA: 1, CDSs: 75, Exons: 22, Five Prime UTRs: 8, Gene: 1, mRNAs: 11, Three Prime UTR: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G01730:CDS:13 | 51 | Chr5: 273019-273069 | Arabidopsis thaliana |
AT5G01730:CDS:11 | 114 | Chr5: 273192-273305 | Arabidopsis thaliana |
AT5G01730:CDS:9 | 87 | Chr5: 273389-273475 | Arabidopsis thaliana |
AT5G01730:CDS:7 | 2626 | Chr5: 273554-276179 | Arabidopsis thaliana |
AT5G01730:CDS:6 | 62 | Chr5: 276292-276353 | Arabidopsis thaliana |
AT5G01730:CDS:5 | 130 | Chr5: 276490-276619 | Arabidopsis thaliana |
AT5G01730:CDS:3 | 124 | Chr5: 276703-276826 | Arabidopsis thaliana |
AT5G01730:CDS:2 | 164 | Chr5: 276918-277081 | Arabidopsis thaliana |
AT5G01730:CDS:1 | 155 | Chr5: 277407-277561 | Arabidopsis thaliana |
AT5G01730:CDS:13.1 | 51 | Chr5: 273019-273069 | Arabidopsis thaliana |
AT5G01730:CDS:11.1 | 114 | Chr5: 273192-273305 | Arabidopsis thaliana |
AT5G01730:CDS:9.1 | 87 | Chr5: 273389-273475 | Arabidopsis thaliana |
AT5G01730:CDS:8 | 2502 | Chr5: 273554-276055 | Arabidopsis thaliana |
AT5G01730:CDS:13.2 | 51 | Chr5: 273019-273069 | Arabidopsis thaliana |
AT5G01730:CDS:11.2 | 114 | Chr5: 273192-273305 | Arabidopsis thaliana |
AT5G01730:CDS:9.2 | 87 | Chr5: 273389-273475 | Arabidopsis thaliana |
AT5G01730:CDS:7.1 | 2626 | Chr5: 273554-276179 | Arabidopsis thaliana |
AT5G01730:CDS:6.1 | 62 | Chr5: 276292-276353 | Arabidopsis thaliana |
AT5G01730:CDS:5.1 | 130 | Chr5: 276490-276619 | Arabidopsis thaliana |
AT5G01730:CDS:4 | 53 | Chr5: 276703-276755 | Arabidopsis thaliana |
AT5G01730:CDS:13.3 | 51 | Chr5: 273019-273069 | Arabidopsis thaliana |
AT5G01730:CDS:11.3 | 114 | Chr5: 273192-273305 | Arabidopsis thaliana |
AT5G01730:CDS:9.3 | 87 | Chr5: 273389-273475 | Arabidopsis thaliana |
AT5G01730:CDS:7.2 | 2626 | Chr5: 273554-276179 | Arabidopsis thaliana |
AT5G01730:CDS:6.2 | 62 | Chr5: 276292-276353 | Arabidopsis thaliana |
AT5G01730:CDS:5.2 | 130 | Chr5: 276490-276619 | Arabidopsis thaliana |
AT5G01730:CDS:4.1 | 53 | Chr5: 276703-276755 | Arabidopsis thaliana |
AT5G01730:CDS:13.4 | 51 | Chr5: 273019-273069 | Arabidopsis thaliana |
AT5G01730:CDS:11.4 | 114 | Chr5: 273192-273305 | Arabidopsis thaliana |
AT5G01730:CDS:9.4 | 87 | Chr5: 273389-273475 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G01730:exon:19 | 238 | Chr5: 272832-273069 | Arabidopsis thaliana |
AT5G01730:exon:13 | 2502 | Chr5: 273554-276055 | Arabidopsis thaliana |
AT5G01730:exon:8 | 175 | Chr5: 276703-276877 | Arabidopsis thaliana |
AT5G01730:exon:18 | 51 | Chr5: 273019-273069 | Arabidopsis thaliana |
AT5G01730:exon:16 | 114 | Chr5: 273192-273305 | Arabidopsis thaliana |
AT5G01730:exon:4 | 235 | Chr5: 277407-277641 | Arabidopsis thaliana |
AT5G01730:exon:17 | 141 | Chr5: 273165-273305 | Arabidopsis thaliana |
AT5G01730:exon:14 | 87 | Chr5: 273389-273475 | Arabidopsis thaliana |
AT5G01730:exon:5 | 190 | Chr5: 277407-277596 | Arabidopsis thaliana |
AT5G01730:exon:1 | 204 | Chr5: 277683-277886 | Arabidopsis thaliana |
AT5G01730:exon:7 | 379 | Chr5: 276703-277081 | Arabidopsis thaliana |
AT5G01730:exon:3 | 239 | Chr5: 277407-277645 | Arabidopsis thaliana |
AT5G01730:exon:15 | 141 | Chr5: 273335-273475 | Arabidopsis thaliana |
AT5G01730:exon:12 | 2626 | Chr5: 273554-276179 | Arabidopsis thaliana |
AT5G01730:exon:11 | 62 | Chr5: 276292-276353 | Arabidopsis thaliana |
AT5G01730:exon:10 | 130 | Chr5: 276490-276619 | Arabidopsis thaliana |
AT5G01730:exon:9 | 124 | Chr5: 276703-276826 | Arabidopsis thaliana |
AT5G01730:exon:6 | 164 | Chr5: 276918-277081 | Arabidopsis thaliana |
AT5G01730:exon:2 | 276 | Chr5: 277407-277682 | Arabidopsis thaliana |
AT5G01732:exon:1 | 809 | Chr5: 272839-273647 | Arabidopsis thaliana |
AT5G01732:exon:2 | 2214 | Chr5: 273724-275937 | Arabidopsis thaliana |
AT5G01732:exon:3 | 403 | Chr5: 276024-276426 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G01730:five_prime_UTR:4 | 35 | Chr5: 277562-277596 | Arabidopsis thaliana |
AT5G01730:five_prime_UTR:8 | 122 | Chr5: 276756-276877 | Arabidopsis thaliana |
AT5G01730:five_prime_UTR:3 | 80 | Chr5: 277562-277641 | Arabidopsis thaliana |
AT5G01730:five_prime_UTR:6 | 190 | Chr5: 277407-277596 | Arabidopsis thaliana |
AT5G01730:five_prime_UTR:1 | 204 | Chr5: 277683-277886 | Arabidopsis thaliana |
AT5G01730:five_prime_UTR:7 | 326 | Chr5: 276756-277081 | Arabidopsis thaliana |
AT5G01730:five_prime_UTR:5 | 239 | Chr5: 277407-277645 | Arabidopsis thaliana |
AT5G01730:five_prime_UTR:2 | 121 | Chr5: 277562-277682 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G01732 | locus:4515103516 | AT5G01732 | 3588 | Chr5: 272839-276426 | A. thaliana | Natural antisense transcript overlaps with AT5G01730;(source:Araport11) | NULL | other RNA |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G01730.1 | 3939 | Chr5: 272832-277886 |
AT5G01730.6 | 2754 | Chr5: 273019-276055 |
AT5G01730.5 | 3245 | Chr5: 273019-276877 |
AT5G01730.3 | 3688 | Chr5: 273019-277645 |
AT5G01730.4 | 3634 | Chr5: 273019-277682 |
AT5G01730.2 | 3843 | Chr5: 273019-277886 |
AT5G01730.9 | 3569 | Chr5: 273165-277641 |
AT5G01730.8 | 3664 | Chr5: 273165-277645 |
AT5G01730.7 | 3819 | Chr5: 273165-277886 |
AT5G01730.10 | 3577 | Chr5: 273335-277645 |
AT5G01730.11 | 3523 | Chr5: 273335-277682 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G01730:three_prime_UTR:1 | 187 | Chr5: 272832-273018 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
A0A178UA95_ARATH A0A1P8BBE5_ARATH A0A1P8BBH5_ARATH A0A1P8BBE8_ARATH A0A1P8BBE9_ARATH A0A1P8BBE6_ARATH | function | Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex. |
SCAR4_ARATH | function | Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex. Regulates trichome branch positioning and expansion. |
A0A178UA95_ARATH A0A1P8BBE5_ARATH A0A1P8BBH5_ARATH SCAR4_ARATH A0A1P8BBE8_ARATH A0A1P8BBE9_ARATH A0A1P8BBE6_ARATH | similarity | Belongs to the SCAR/WAVE family. |
SCAR4_ARATH | tissue specificity | Expressed in expanding cotyledons, expanding leaves and expanding siliques containing developing embryos. Detected in unopened flower buds and in the expanding tip region of roots. Reduced expression in mature leaves. |
Function
Gene Ontology
cellular component | |
---|---|
plastoglobule | ECO |
cytoskeleton | ECO |
chloroplast | ECO |
SCAR complex | ECO |
molecular function | |
actin binding | ECO |
biological process | |
positive regulation of actin nucleation | ECO |
actin cytoskeleton organization | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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