External Links
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- Plant Proteome Database
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- ATTED-II
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNAs: 6, CDSs: 27, Exons: 20, Five Prime UTR: 1, Gene: 1, mRNAs: 4, Three Prime UTRs: 4
Antisense lncRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G01675.1 | 417 | Chr5: 3173371-3173996 |
AT5G01675.2 | 626 | Chr5: 3173372-3173997 |
AT5G01675.3 | 656 | Chr5: 3173372-3179600 |
AT5G01675.6 | 666 | Chr5: 3173372-3179600 |
AT5G01675.4 | 653 | Chr5: 3173720-3179600 |
AT5G01675.5 | 587 | Chr5: 3173720-3179600 |
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G10140:CDS:9 | 102 | Chr5: 3173724-3173825 | Arabidopsis thaliana |
AT5G10140:CDS:6 | 42 | Chr5: 3174818-3174859 | Arabidopsis thaliana |
AT5G10140:CDS:5 | 42 | Chr5: 3175054-3175095 | Arabidopsis thaliana |
AT5G10140:CDS:4 | 100 | Chr5: 3175174-3175273 | Arabidopsis thaliana |
AT5G10140:CDS:3 | 62 | Chr5: 3175364-3175425 | Arabidopsis thaliana |
AT5G10140:CDS:2 | 58 | Chr5: 3175604-3175661 | Arabidopsis thaliana |
AT5G10140:CDS:1 | 185 | Chr5: 3179155-3179339 | Arabidopsis thaliana |
AT5G10140:CDS:8 | 15 | Chr5: 3173877-3173891 | Arabidopsis thaliana |
AT5G10140:CDS:6.1 | 42 | Chr5: 3174818-3174859 | Arabidopsis thaliana |
AT5G10140:CDS:5.1 | 42 | Chr5: 3175054-3175095 | Arabidopsis thaliana |
AT5G10140:CDS:4.1 | 100 | Chr5: 3175174-3175273 | Arabidopsis thaliana |
AT5G10140:CDS:3.1 | 62 | Chr5: 3175364-3175425 | Arabidopsis thaliana |
AT5G10140:CDS:2.1 | 58 | Chr5: 3175604-3175661 | Arabidopsis thaliana |
AT5G10140:CDS:1.1 | 185 | Chr5: 3179155-3179339 | Arabidopsis thaliana |
AT5G10140:CDS:9.1 | 102 | Chr5: 3173724-3173825 | Arabidopsis thaliana |
AT5G10140:CDS:5.2 | 42 | Chr5: 3175054-3175095 | Arabidopsis thaliana |
AT5G10140:CDS:4.2 | 100 | Chr5: 3175174-3175273 | Arabidopsis thaliana |
AT5G10140:CDS:3.2 | 62 | Chr5: 3175364-3175425 | Arabidopsis thaliana |
AT5G10140:CDS:2.2 | 58 | Chr5: 3175604-3175661 | Arabidopsis thaliana |
AT5G10140:CDS:1.2 | 185 | Chr5: 3179155-3179339 | Arabidopsis thaliana |
AT5G10140:CDS:7 | 72 | Chr5: 3174036-3174107 | Arabidopsis thaliana |
AT5G10140:CDS:6.2 | 42 | Chr5: 3174818-3174859 | Arabidopsis thaliana |
AT5G10140:CDS:5.3 | 42 | Chr5: 3175054-3175095 | Arabidopsis thaliana |
AT5G10140:CDS:4.3 | 100 | Chr5: 3175174-3175273 | Arabidopsis thaliana |
AT5G10140:CDS:3.3 | 62 | Chr5: 3175364-3175425 | Arabidopsis thaliana |
AT5G10140:CDS:2.3 | 58 | Chr5: 3175604-3175661 | Arabidopsis thaliana |
AT5G10140:CDS:1.3 | 185 | Chr5: 3179155-3179339 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G01675:exon:1 | 140 | Chr5: 3173371-3173510 | Arabidopsis thaliana |
AT5G01675:exon:6 | 277 | Chr5: 3173720-3173996 | Arabidopsis thaliana |
AT5G01675:exon:3 | 626 | Chr5: 3173372-3173997 | Arabidopsis thaliana |
AT5G01675:exon:2 | 139 | Chr5: 3173372-3173510 | Arabidopsis thaliana |
AT5G01675:exon:8 | 64 | Chr5: 3178985-3179048 | Arabidopsis thaliana |
AT5G01675:exon:10 | 463 | Chr5: 3179138-3179600 | Arabidopsis thaliana |
AT5G01675:exon:5 | 123 | Chr5: 3173720-3173842 | Arabidopsis thaliana |
AT5G01675:exon:4 | 57 | Chr5: 3173720-3173776 | Arabidopsis thaliana |
AT5G01675:exon:7 | 13 | Chr5: 3178884-3178896 | Arabidopsis thaliana |
AT5G01675:exon:9 | 517 | Chr5: 3179084-3179600 | Arabidopsis thaliana |
AT5G10140:exon:10 | 444 | Chr5: 3173382-3173825 | Arabidopsis thaliana |
AT5G10140:exon:8 | 395 | Chr5: 3173497-3173891 | Arabidopsis thaliana |
AT5G10140:exon:9 | 329 | Chr5: 3173497-3173825 | Arabidopsis thaliana |
AT5G10140:exon:7 | 72 | Chr5: 3174036-3174107 | Arabidopsis thaliana |
AT5G10140:exon:6 | 42 | Chr5: 3174818-3174859 | Arabidopsis thaliana |
AT5G10140:exon:5 | 42 | Chr5: 3175054-3175095 | Arabidopsis thaliana |
AT5G10140:exon:4 | 100 | Chr5: 3175174-3175273 | Arabidopsis thaliana |
AT5G10140:exon:3 | 62 | Chr5: 3175364-3175425 | Arabidopsis thaliana |
AT5G10140:exon:2 | 58 | Chr5: 3175604-3175661 | Arabidopsis thaliana |
AT5G10140:exon:1 | 294 | Chr5: 3179155-3179448 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G10140:five_prime_UTR:1 | 109 | Chr5: 3179340-3179448 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G10140 | locus:2184118 | FLC | FLOWERING LOCUS C | 6067 | Chr5: 3173382-3179448 | A. thaliana | K-box region and MADS-box transcription factor family protein;(source:Araport11) | MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization, but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3? to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex. | K-box region and MADS-box transcription factor family protein | AGL25, FLC, FLF, RSB6 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G10140.1 | 1042 | Chr5: 3173382-3179448 |
AT5G10140.2 | 993 | Chr5: 3173497-3179448 |
AT5G10140.4 | 885 | Chr5: 3173497-3179448 |
AT5G10140.3 | 999 | Chr5: 3173497-3179448 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G10140:three_prime_UTR:4 | 342 | Chr5: 3173382-3173723 | Arabidopsis thaliana |
AT5G10140:three_prime_UTR:1 | 380 | Chr5: 3173497-3173876 | Arabidopsis thaliana |
AT5G10140:three_prime_UTR:3 | 227 | Chr5: 3173497-3173723 | Arabidopsis thaliana |
AT5G10140:three_prime_UTR:2 | 329 | Chr5: 3173497-3173825 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
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No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...