help  | faq  | software  | BAR
Hide

Oops!

https://bar.utoronto.ca/thalemine/service/ is incorrect
Hide Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.

Gene : AT5G01675 A. thaliana

DB identifier  ? AT5G01675 Brief Description  Natural antisense transcript overlaps with AT5G10140 (FLC)
Score  100.0
TAIR Computational Description  Natural antisense transcript overlaps with AT5G10140 (FLC);(source:Araport11)
TAIR Curator Summary  Small RNA-induced heterochromatic region at the end of FLC which produces cold-induced FLC antisense lncRNA transcripts. Represses FLOWERING LOCUS C (FLC) transcription with increased H3K27me3 and decreased H3K36me3 levels in response to cold temperatures. FCA binding of COOLAIR and SSU72 is critical for PRC2 enrichment and H3K27me3 deposition.
TAIR Short Description  NULL
TAIR Aliases  COOLAIR

1 Gene Rifs

1 Organism

2 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 6230  
Location: Chr5:3173371-3179600

Gene models - AT5G01675 AT5G01675

? Gene models

Transcripts: 6  Exons: 14  Introns: 8 

Overlapping Features

? Genome features that overlap coordinates of this Gene

16 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

No comments found

0 Proteins

Function

Gene Ontology

cellular component
No terms in this category.
molecular function
No terms in this category.
biological process
No terms in this category.

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

6 Data Sets