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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 20, Exons: 15, Five Prime UTRs: 6, Gene: 1, Lnc RNA: 1, mRNAs: 4, Three Prime UTRs: 3, Transposable Elements: 2, Transposon Fragments: 3
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G39860:CDS:1 | 117 | Chr4: 18499909-18500025 | Arabidopsis thaliana |
AT4G39860:CDS:2 | 74 | Chr4: 18500110-18500183 | Arabidopsis thaliana |
AT4G39860:CDS:3 | 124 | Chr4: 18500596-18500719 | Arabidopsis thaliana |
AT4G39860:CDS:4 | 312 | Chr4: 18500801-18501112 | Arabidopsis thaliana |
AT4G39860:CDS:6 | 273 | Chr4: 18501200-18501472 | Arabidopsis thaliana |
AT4G39860:CDS:1.1 | 117 | Chr4: 18499909-18500025 | Arabidopsis thaliana |
AT4G39860:CDS:2.1 | 74 | Chr4: 18500110-18500183 | Arabidopsis thaliana |
AT4G39860:CDS:3.1 | 124 | Chr4: 18500596-18500719 | Arabidopsis thaliana |
AT4G39860:CDS:4.1 | 312 | Chr4: 18500801-18501112 | Arabidopsis thaliana |
AT4G39860:CDS:6.1 | 273 | Chr4: 18501200-18501472 | Arabidopsis thaliana |
AT4G39860:CDS:1.2 | 117 | Chr4: 18499909-18500025 | Arabidopsis thaliana |
AT4G39860:CDS:2.2 | 74 | Chr4: 18500110-18500183 | Arabidopsis thaliana |
AT4G39860:CDS:3.2 | 124 | Chr4: 18500596-18500719 | Arabidopsis thaliana |
AT4G39860:CDS:4.2 | 312 | Chr4: 18500801-18501112 | Arabidopsis thaliana |
AT4G39860:CDS:6.2 | 273 | Chr4: 18501200-18501472 | Arabidopsis thaliana |
AT4G39860:CDS:1.3 | 117 | Chr4: 18499909-18500025 | Arabidopsis thaliana |
AT4G39860:CDS:2.3 | 74 | Chr4: 18500110-18500183 | Arabidopsis thaliana |
AT4G39860:CDS:3.3 | 124 | Chr4: 18500596-18500719 | Arabidopsis thaliana |
AT4G39860:CDS:5 | 309 | Chr4: 18500804-18501112 | Arabidopsis thaliana |
AT4G39860:CDS:6.3 | 273 | Chr4: 18501200-18501472 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G39860:exon:1 | 430 | Chr4: 18498202-18498631 | Arabidopsis thaliana |
AT4G39860:exon:6 | 137 | Chr4: 18499889-18500025 | Arabidopsis thaliana |
AT4G39860:exon:12 | 443 | Chr4: 18501200-18501642 | Arabidopsis thaliana |
AT4G39860:exon:2 | 416 | Chr4: 18498216-18498631 | Arabidopsis thaliana |
AT4G39860:exon:5 | 140 | Chr4: 18499886-18500025 | Arabidopsis thaliana |
AT4G39860:exon:11 | 273 | Chr4: 18501200-18501472 | Arabidopsis thaliana |
AT4G39860:exon:3 | 540 | Chr4: 18499486-18500025 | Arabidopsis thaliana |
AT4G39860:exon:9 | 312 | Chr4: 18500801-18501112 | Arabidopsis thaliana |
AT4G39860:exon:14 | 483 | Chr4: 18501200-18501682 | Arabidopsis thaliana |
AT4G39860:exon:4 | 273 | Chr4: 18499753-18500025 | Arabidopsis thaliana |
AT4G39860:exon:7 | 74 | Chr4: 18500110-18500183 | Arabidopsis thaliana |
AT4G39860:exon:8 | 124 | Chr4: 18500596-18500719 | Arabidopsis thaliana |
AT4G39860:exon:10 | 309 | Chr4: 18500804-18501112 | Arabidopsis thaliana |
AT4G39860:exon:13 | 475 | Chr4: 18501200-18501674 | Arabidopsis thaliana |
AT4G09945:exon:1 | 232 | Chr4: 18498300-18498531 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G39860:five_prime_UTR:1 | 430 | Chr4: 18498202-18498631 | Arabidopsis thaliana |
AT4G39860:five_prime_UTR:6 | 20 | Chr4: 18499889-18499908 | Arabidopsis thaliana |
AT4G39860:five_prime_UTR:2 | 416 | Chr4: 18498216-18498631 | Arabidopsis thaliana |
AT4G39860:five_prime_UTR:5 | 23 | Chr4: 18499886-18499908 | Arabidopsis thaliana |
AT4G39860:five_prime_UTR:3 | 423 | Chr4: 18499486-18499908 | Arabidopsis thaliana |
AT4G39860:five_prime_UTR:4 | 156 | Chr4: 18499753-18499908 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT4G09945 | AT4G09945 | 232 | Chr4: 18498300-18498531 | A. thaliana | None;(source:Araport11) | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G39860.1 | 1520 | Chr4: 18498202-18501642 |
AT4G39860.3 | 1339 | Chr4: 18498216-18501472 |
AT4G39860.4 | 1533 | Chr4: 18499486-18501682 |
AT4G39860.2 | 1255 | Chr4: 18499753-18501674 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G39860:three_prime_UTR:1 | 170 | Chr4: 18501473-18501642 | Arabidopsis thaliana |
AT4G39860:three_prime_UTR:3 | 210 | Chr4: 18501473-18501682 | Arabidopsis thaliana |
AT4G39860:three_prime_UTR:2 | 202 | Chr4: 18501473-18501674 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE89730 | 1184 | Chr4: 18498650-18499833 | Arabidopsis thaliana |
AT4TE89735 | 453 | Chr4: 18499195-18499647 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE89730:transposon_fragment:1 | 545 | Chr4: 18498650-18499194 | Arabidopsis thaliana |
AT4TE89730:transposon_fragment:2 | 186 | Chr4: 18499648-18499833 | Arabidopsis thaliana |
AT4TE89735:transposon_fragment:1 | 453 | Chr4: 18499195-18499647 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
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No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
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Expression
Co-expression
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Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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