External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G39380:CDS:8 | 144 | Chr4: 18309628-18309771 | Arabidopsis thaliana |
AT4G39380:CDS:7 | 117 | Chr4: 18309910-18310026 | Arabidopsis thaliana |
AT4G39380:CDS:5 | 558 | Chr4: 18310150-18310707 | Arabidopsis thaliana |
AT4G39380:CDS:4 | 181 | Chr4: 18310804-18310984 | Arabidopsis thaliana |
AT4G39380:CDS:3 | 233 | Chr4: 18311059-18311291 | Arabidopsis thaliana |
AT4G39380:CDS:2 | 206 | Chr4: 18311382-18311587 | Arabidopsis thaliana |
AT4G39380:CDS:1 | 118 | Chr4: 18311757-18311874 | Arabidopsis thaliana |
AT4G39380:CDS:8.1 | 144 | Chr4: 18309628-18309771 | Arabidopsis thaliana |
AT4G39380:CDS:7.1 | 117 | Chr4: 18309910-18310026 | Arabidopsis thaliana |
AT4G39380:CDS:5.1 | 558 | Chr4: 18310150-18310707 | Arabidopsis thaliana |
AT4G39380:CDS:4.1 | 181 | Chr4: 18310804-18310984 | Arabidopsis thaliana |
AT4G39380:CDS:3.1 | 233 | Chr4: 18311059-18311291 | Arabidopsis thaliana |
AT4G39380:CDS:2.1 | 206 | Chr4: 18311382-18311587 | Arabidopsis thaliana |
AT4G39380:CDS:1.1 | 118 | Chr4: 18311757-18311874 | Arabidopsis thaliana |
AT4G39380:CDS:8.2 | 144 | Chr4: 18309628-18309771 | Arabidopsis thaliana |
AT4G39380:CDS:7.2 | 117 | Chr4: 18309910-18310026 | Arabidopsis thaliana |
AT4G39380:CDS:5.2 | 558 | Chr4: 18310150-18310707 | Arabidopsis thaliana |
AT4G39380:CDS:4.2 | 181 | Chr4: 18310804-18310984 | Arabidopsis thaliana |
AT4G39380:CDS:3.2 | 233 | Chr4: 18311059-18311291 | Arabidopsis thaliana |
AT4G39380:CDS:2.2 | 206 | Chr4: 18311382-18311587 | Arabidopsis thaliana |
AT4G39380:CDS:1.2 | 118 | Chr4: 18311757-18311874 | Arabidopsis thaliana |
AT4G39380:CDS:8.3 | 144 | Chr4: 18309628-18309771 | Arabidopsis thaliana |
AT4G39380:CDS:6 | 165 | Chr4: 18309910-18310074 | Arabidopsis thaliana |
AT4G39380:CDS:5.3 | 558 | Chr4: 18310150-18310707 | Arabidopsis thaliana |
AT4G39380:CDS:4.3 | 181 | Chr4: 18310804-18310984 | Arabidopsis thaliana |
AT4G39380:CDS:3.3 | 233 | Chr4: 18311059-18311291 | Arabidopsis thaliana |
AT4G39380:CDS:2.3 | 206 | Chr4: 18311382-18311587 | Arabidopsis thaliana |
AT4G39380:CDS:1.3 | 118 | Chr4: 18311757-18311874 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G39370:exon:16 | 692 | Chr4: 18308278-18308969 | Arabidopsis thaliana |
AT4G39380:exon:15 | 596 | Chr4: 18308854-18309449 | Arabidopsis thaliana |
AT4G39380:exon:1 | 139 | Chr4: 18312606-18312744 | Arabidopsis thaliana |
AT4G39380:exon:13 | 746 | Chr4: 18309026-18309771 | Arabidopsis thaliana |
AT4G39380:exon:14 | 424 | Chr4: 18309026-18309449 | Arabidopsis thaliana |
AT4G39380:exon:10 | 117 | Chr4: 18309910-18310026 | Arabidopsis thaliana |
AT4G39380:exon:3 | 992 | Chr4: 18311757-18312748 | Arabidopsis thaliana |
AT4G39380:exon:12 | 296 | Chr4: 18309154-18309449 | Arabidopsis thaliana |
AT4G39380:exon:11 | 171 | Chr4: 18309601-18309771 | Arabidopsis thaliana |
AT4G39380:exon:9 | 165 | Chr4: 18309910-18310074 | Arabidopsis thaliana |
AT4G39380:exon:8 | 558 | Chr4: 18310150-18310707 | Arabidopsis thaliana |
AT4G39380:exon:7 | 181 | Chr4: 18310804-18310984 | Arabidopsis thaliana |
AT4G39380:exon:6 | 233 | Chr4: 18311059-18311291 | Arabidopsis thaliana |
AT4G39380:exon:5 | 206 | Chr4: 18311382-18311587 | Arabidopsis thaliana |
AT4G39380:exon:4 | 119 | Chr4: 18311757-18311875 | Arabidopsis thaliana |
AT4G39380:exon:2 | 119 | Chr4: 18312606-18312724 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G39380:five_prime_UTR:1 | 139 | Chr4: 18312606-18312744 | Arabidopsis thaliana |
AT4G39380:five_prime_UTR:3 | 874 | Chr4: 18311875-18312748 | Arabidopsis thaliana |
AT4G39380:five_prime_UTR:4 | 1 | Chr4: 18311875-18311875 | Arabidopsis thaliana |
AT4G39380:five_prime_UTR:2 | 119 | Chr4: 18312606-18312724 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT4G39370 | locus:2122447 | UBP27 | ubiquitin-specific protease 27 | 2835 | Chr4: 18306135-18308969 | A. thaliana | ubiquitin-specific protease 27;(source:Araport11) | Encodes a ubiquitin-specific protease. | ubiquitin-specific protease 27 | UBP27 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G39370.1 | 2017 | Chr4: 18306204-18308969 |
AT4G39380.1 | 2320 | Chr4: 18308854-18312744 |
AT4G39380.3 | 3033 | Chr4: 18309026-18312748 |
AT4G39380.4 | 2882 | Chr4: 18309026-18312748 |
AT4G39380.2 | 2048 | Chr4: 18309154-18312724 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G39370:three_prime_UTR:5 | 344 | Chr4: 18308626-18308969 | Arabidopsis thaliana |
AT4G39380:three_prime_UTR:5 | 596 | Chr4: 18308854-18309449 | Arabidopsis thaliana |
AT4G39380:three_prime_UTR:3 | 602 | Chr4: 18309026-18309627 | Arabidopsis thaliana |
AT4G39380:three_prime_UTR:4 | 424 | Chr4: 18309026-18309449 | Arabidopsis thaliana |
AT4G39380:three_prime_UTR:2 | 296 | Chr4: 18309154-18309449 | Arabidopsis thaliana |
AT4G39380:three_prime_UTR:1 | 27 | Chr4: 18309601-18309627 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
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No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...