External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 39, Exons: 20, Five Prime UTRs: 4, Gene: 1, mRNAs: 4, Three Prime UTRs: 3, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G39180:CDS:14 | 15 | Chr4: 18244006-18244020 | Arabidopsis thaliana |
AT4G39180:CDS:13 | 75 | Chr4: 18244131-18244205 | Arabidopsis thaliana |
AT4G39180:CDS:12 | 347 | Chr4: 18244284-18244630 | Arabidopsis thaliana |
AT4G39180:CDS:11 | 142 | Chr4: 18244703-18244844 | Arabidopsis thaliana |
AT4G39180:CDS:9 | 90 | Chr4: 18244922-18245011 | Arabidopsis thaliana |
AT4G39180:CDS:8 | 100 | Chr4: 18245108-18245207 | Arabidopsis thaliana |
AT4G39180:CDS:7 | 50 | Chr4: 18245296-18245345 | Arabidopsis thaliana |
AT4G39180:CDS:6 | 102 | Chr4: 18245438-18245539 | Arabidopsis thaliana |
AT4G39180:CDS:5 | 78 | Chr4: 18245629-18245706 | Arabidopsis thaliana |
AT4G39180:CDS:4 | 267 | Chr4: 18245788-18246054 | Arabidopsis thaliana |
AT4G39180:CDS:3 | 100 | Chr4: 18246135-18246234 | Arabidopsis thaliana |
AT4G39180:CDS:2 | 250 | Chr4: 18246304-18246553 | Arabidopsis thaliana |
AT4G39180:CDS:1 | 46 | Chr4: 18246628-18246673 | Arabidopsis thaliana |
AT4G39180:CDS:14.1 | 15 | Chr4: 18244006-18244020 | Arabidopsis thaliana |
AT4G39180:CDS:13.1 | 75 | Chr4: 18244131-18244205 | Arabidopsis thaliana |
AT4G39180:CDS:12.1 | 347 | Chr4: 18244284-18244630 | Arabidopsis thaliana |
AT4G39180:CDS:10 | 145 | Chr4: 18244703-18244847 | Arabidopsis thaliana |
AT4G39180:CDS:9.1 | 90 | Chr4: 18244922-18245011 | Arabidopsis thaliana |
AT4G39180:CDS:8.1 | 100 | Chr4: 18245108-18245207 | Arabidopsis thaliana |
AT4G39180:CDS:7.1 | 50 | Chr4: 18245296-18245345 | Arabidopsis thaliana |
AT4G39180:CDS:6.1 | 102 | Chr4: 18245438-18245539 | Arabidopsis thaliana |
AT4G39180:CDS:5.1 | 78 | Chr4: 18245629-18245706 | Arabidopsis thaliana |
AT4G39180:CDS:4.1 | 267 | Chr4: 18245788-18246054 | Arabidopsis thaliana |
AT4G39180:CDS:3.1 | 100 | Chr4: 18246135-18246234 | Arabidopsis thaliana |
AT4G39180:CDS:2.1 | 250 | Chr4: 18246304-18246553 | Arabidopsis thaliana |
AT4G39180:CDS:1.1 | 46 | Chr4: 18246628-18246673 | Arabidopsis thaliana |
AT4G39180:CDS:14.2 | 15 | Chr4: 18244006-18244020 | Arabidopsis thaliana |
AT4G39180:CDS:13.2 | 75 | Chr4: 18244131-18244205 | Arabidopsis thaliana |
AT4G39180:CDS:12.2 | 347 | Chr4: 18244284-18244630 | Arabidopsis thaliana |
AT4G39180:CDS:11.1 | 142 | Chr4: 18244703-18244844 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G39170:exon:12 | 210 | Chr4: 18243586-18243795 | Arabidopsis thaliana |
AT4G39180:exon:19 | 295 | Chr4: 18243726-18244020 | Arabidopsis thaliana |
AT4G39180:exon:2 | 52 | Chr4: 18246964-18247015 | Arabidopsis thaliana |
AT4G39180:exon:18 | 247 | Chr4: 18243774-18244020 | Arabidopsis thaliana |
AT4G39180:exon:13 | 145 | Chr4: 18244703-18244847 | Arabidopsis thaliana |
AT4G39180:exon:1 | 413 | Chr4: 18248393-18248805 | Arabidopsis thaliana |
AT4G39180:exon:17 | 15 | Chr4: 18244006-18244020 | Arabidopsis thaliana |
AT4G39180:exon:16 | 75 | Chr4: 18244131-18244205 | Arabidopsis thaliana |
AT4G39180:exon:15 | 347 | Chr4: 18244284-18244630 | Arabidopsis thaliana |
AT4G39180:exon:14 | 142 | Chr4: 18244703-18244844 | Arabidopsis thaliana |
AT4G39180:exon:12 | 90 | Chr4: 18244922-18245011 | Arabidopsis thaliana |
AT4G39180:exon:11 | 100 | Chr4: 18245108-18245207 | Arabidopsis thaliana |
AT4G39180:exon:10 | 50 | Chr4: 18245296-18245345 | Arabidopsis thaliana |
AT4G39180:exon:9 | 102 | Chr4: 18245438-18245539 | Arabidopsis thaliana |
AT4G39180:exon:8 | 78 | Chr4: 18245629-18245706 | Arabidopsis thaliana |
AT4G39180:exon:7 | 267 | Chr4: 18245788-18246054 | Arabidopsis thaliana |
AT4G39180:exon:6 | 100 | Chr4: 18246135-18246234 | Arabidopsis thaliana |
AT4G39180:exon:5 | 250 | Chr4: 18246304-18246553 | Arabidopsis thaliana |
AT4G39180:exon:4 | 57 | Chr4: 18246628-18246684 | Arabidopsis thaliana |
AT4G39180:exon:3 | 118 | Chr4: 18246796-18246913 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G39180:five_prime_UTR:2 | 52 | Chr4: 18246964-18247015 | Arabidopsis thaliana |
AT4G39180:five_prime_UTR:1 | 413 | Chr4: 18248393-18248805 | Arabidopsis thaliana |
AT4G39180:five_prime_UTR:4 | 11 | Chr4: 18246674-18246684 | Arabidopsis thaliana |
AT4G39180:five_prime_UTR:3 | 118 | Chr4: 18246796-18246913 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT4G39170 | locus:2136288 | AT4G39170 | 3191 | Chr4: 18240605-18243795 | A. thaliana | Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11) | NULL | Sec14p-like phosphatidylinositol transfer family protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G39170.1 | 2278 | Chr4: 18240628-18243795 |
AT4G39180.2 | 2005 | Chr4: 18243726-18247015 |
AT4G39180.1 | 2321 | Chr4: 18243774-18248805 |
AT4G39180.3 | 1791 | Chr4: 18244006-18246913 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G39170:three_prime_UTR:2 | 174 | Chr4: 18243622-18243795 | Arabidopsis thaliana |
AT4G39180:three_prime_UTR:2 | 280 | Chr4: 18243726-18244005 | Arabidopsis thaliana |
AT4G39180:three_prime_UTR:1 | 232 | Chr4: 18243774-18244005 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE88410 | 637 | Chr4: 18247716-18248352 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE88410:transposon_fragment:1 | 637 | Chr4: 18247716-18248352 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
SFH2_ARATH | function | Required for transport of secretory proteins from the Golgi complex (By similarity). Catalyzes the transfer of phosphatidylinositol and phosphatidylcholine between membranes in vitro. |
SFH2_ARATH F4JVA8_ARATH | similarity | Belongs to the SFH family. |
Function
Gene Ontology
cellular component | |
---|---|
plasma membrane | ECO |
Golgi membrane | ECO |
molecular function | |
No terms in this category. | |
biological process | |
phosphatidylcholine biosynthetic process | ECO |
protein transport | ECO |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
---|
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...