help  | faq  | software  | BAR
Hide

Oops!

Error: 403
Hide

Oops!

https://bar.utoronto.ca/thalemine/service/ is incorrect
Hide Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.

Gene : RD19 A. thaliana

DB identifier  ? AT4G39090 Secondary Identifier  ? locus:2120222
Name  ? RESPONSIVE TO DEHYDRATION 19 Brief Description  Papain family cysteine protease
TAIR Computational Description  Papain family cysteine protease;(source:Araport11)
TAIR Curator Summary  Similar to cysteine proteinases, induced by desiccation but not abscisic acid. Required for RRS1-R mediated resistance against Ralstonia solanacearum. Interacts with the R. solanacearum type III effector PopP2. RD19 associates with PopP2 to form a nuclear complex that is required for activation of the RRS1-R�mediated resistance response.
TAIR Short Description  Papain family cysteine protease
TAIR Aliases  RD19, RD19A

3 Gene Rifs

1 Organism

25 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2075  
Location: Chr4:18215542-18217616 reverse strand

Gene models - RD19 AT4G39090

? Gene models

Transcripts: 1  Exons: 3  Introns: 2 

Overlapping Features

? Genome features that overlap coordinates of this Gene

4 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
RD19A_ARATH function Probable thiol protease (By similarity). Required for RRS1-mediated resistance against Ralstonia solanacearum. Plays a crucial role as host factor for PopP2-triggered RRS1-mediated resistance. Interacts with the R.solanacearum type III effector PopP2 to form a nuclear complex that is required for activation of the RRS1-mediated resistance response (PubMed:18708476).
RD19A_ARATH similarity Belongs to the peptidase C1 family.
RD19A_ARATH subcellular location Predominantly vacuolar. From the Golgi apparatus, probably transported to the lytic vacuole (LV) in clathrin-coated vesicles (CCVs) via the prevacuolar compartment (PVC). Relocalizes to the nucleus when associated in a complex with the Ralstonia solanacearum type III effector PopP2.

1 Proteins

Function

Gene Ontology

cellular component
plasma membrane  ? ECO  
nucleus  ? ECO  
lytic vacuole  ? ECO  
vacuole  ? ECO  
molecular function
cysteine-type endopeptidase activity  ? ECO  
biological process
proteolysis  ? ECO  
response to salt stress  ? ECO  
response to osmotic stress  ? ECO  
defense response to bacterium  ? ECO  

Interactions

Interaction Network

Show the following interaction types:
Reset view
Show in table format
Export graph

Click on a gene to get more info about it.

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets