External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
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- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G38670:CDS:4 | 91 | Chr4: 18069856-18069946 | Arabidopsis thaliana |
AT4G38670:CDS:3 | 700 | Chr4: 18070376-18071075 | Arabidopsis thaliana |
AT4G38670:CDS:1 | 55 | Chr4: 18071173-18071227 | Arabidopsis thaliana |
AT4G38670:CDS:4.1 | 91 | Chr4: 18069856-18069946 | Arabidopsis thaliana |
AT4G38670:CDS:3.1 | 700 | Chr4: 18070376-18071075 | Arabidopsis thaliana |
AT4G38670:CDS:1.1 | 55 | Chr4: 18071173-18071227 | Arabidopsis thaliana |
AT4G38670:CDS:4.2 | 91 | Chr4: 18069856-18069946 | Arabidopsis thaliana |
AT4G38670:CDS:2 | 707 | Chr4: 18070376-18071082 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G38670:exon:6 | 483 | Chr4: 18069464-18069946 | Arabidopsis thaliana |
AT4G38670:exon:7 | 277 | Chr4: 18069464-18069740 | Arabidopsis thaliana |
AT4G38670:exon:4 | 132 | Chr4: 18069815-18069946 | Arabidopsis thaliana |
AT4G38670:exon:3 | 700 | Chr4: 18070376-18071075 | Arabidopsis thaliana |
AT4G38670:exon:1 | 358 | Chr4: 18071173-18071530 | Arabidopsis thaliana |
AT4G38670:exon:5 | 464 | Chr4: 18069483-18069946 | Arabidopsis thaliana |
AT4G38670:exon:2 | 994 | Chr4: 18070376-18071369 | Arabidopsis thaliana |
AT4G38680:exon:1 | 1734 | Chr4: 18071449-18073182 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G38670:five_prime_UTR:1 | 303 | Chr4: 18071228-18071530 | Arabidopsis thaliana |
AT4G38670:five_prime_UTR:2 | 287 | Chr4: 18071083-18071369 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT4G38680 | locus:2121219 | GRP2 | glycine rich protein 2 | 1734 | Chr4: 18071449-18073182 | A. thaliana | glycine rich protein 2;(source:Araport11) | Encodes a glycine-rich protein that binds nucleic acids and promotes DNA melting. Its transcript and protein levels are up-regulated in response to cold treatment with protein levels peaking earlier in shoots (~10-14 days) than in roots (~21 days). It is normally expressed in meristematic regions and developing tissues where cell division occurs. RNAi and antisense lines with lower levels of CSP2/GRP2 transcripts flower earlier than wild type plants and have some defects in anther and seed development. | glycine rich protein 2 | ATCSP2, CSDP2, CSP2, GRP2 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G38670.1 | 1541 | Chr4: 18069464-18071530 |
AT4G38670.3 | 1467 | Chr4: 18069464-18071530 |
AT4G38670.2 | 1458 | Chr4: 18069483-18071369 |
AT4G38680.1 | 1734 | Chr4: 18071449-18073182 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G38670:three_prime_UTR:3 | 392 | Chr4: 18069464-18069855 | Arabidopsis thaliana |
AT4G38670:three_prime_UTR:4 | 277 | Chr4: 18069464-18069740 | Arabidopsis thaliana |
AT4G38670:three_prime_UTR:1 | 41 | Chr4: 18069815-18069855 | Arabidopsis thaliana |
AT4G38670:three_prime_UTR:2 | 373 | Chr4: 18069483-18069855 | Arabidopsis thaliana |
AT4G38680:three_prime_UTR:1 | 791 | Chr4: 18071449-18072239 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
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No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...