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Gene : SPT A. thaliana

DB identifier  ? AT4G36930 Secondary Identifier  ? locus:2115080
Name  ? SPATULA Brief Description  basic helix-loop-helix (bHLH) DNA-binding superfamily protein
TAIR Computational Description  basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
TAIR Curator Summary  Encodes a transcription factor of the bHLH protein family. Mutants have abnormal, unfused carpels and reduced seed dormancy.
TAIR Short Description  basic helix-loop-helix (bHLH) DNA-binding superfamily protein
TAIR Aliases  SPT

17 Gene Rifs

1 Organism

46 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2304  
Location: Chr4:17414083-17416386

Gene models - SPT AT4G36930

? Gene models

Transcripts: 1  Exons: 7  Introns: 6 

Overlapping Features

? Genome features that overlap coordinates of this Gene

8 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
SPT_ARATH developmental stage During flower initiation, expressed in the peripheral zone of the shoot apical meristem. Confined to the anlagen of successive flower buds yet to arise. Later expressed in abaxial and adaxial sepal primordia, but not in sepals. When sepals initiate, localized in the region interior to them. Within the gynoecium, detected in the initiating and developing medial regions, and then in the developing septum and stigma. SPT expression also occurs in sub-regions of developing ovules, and in the wall and dehiscence zone of the maturing fruit. As the petals develop, becomes restricted to the adaxial epidermis. In stamen expression increase in the vicinity of the archesporial cells and in cells undergoing divisions to produce sporogenous and secondary parietal cells of the anther locules. Expressed in the tapetum and microspore mother cells until the initiation of meiosis. Also detected in stomium and filaments.
SPT_ARATH function Transcription factor that plays a role in floral organogenesis. Promotes the growth of carpel margins and of pollen tract tissues derived from them.
SPT_ARATH tissue specificity Expressed in lateral root caps, young leaves, stipules, maturing pith cells of the stem, differentiating vascular cells, shoot apical meristems and flowers.

1 Proteins

Function

Gene Ontology

cellular component
nucleus  ? ECO  
molecular function
identical protein binding  ? ECO  
DNA-binding transcription factor activity  ? ECO  
transcription cis-regulatory region binding  ? ECO  
protein dimerization activity  ? ECO  
biological process
response to red light  ? ECO  
circadian rhythm  ? ECO  
response to cold  ? ECO  
negative regulation of seed germination  ? ECO  
carpel development  ? ECO  
fruit development  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

9 Data Sets