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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G35295:CDS:2 | 75 | Chr4: 16795873-16795947 | Arabidopsis thaliana |
AT4G35295:CDS:3 | 210 | Chr4: 16796014-16796223 | Arabidopsis thaliana |
AT4G35300:CDS:8 | 445 | Chr4: 16796432-16796876 | Arabidopsis thaliana |
AT4G35300:CDS:7 | 188 | Chr4: 16796971-16797158 | Arabidopsis thaliana |
AT4G35300:CDS:5 | 941 | Chr4: 16797255-16798195 | Arabidopsis thaliana |
AT4G35300:CDS:2 | 567 | Chr4: 16798278-16798844 | Arabidopsis thaliana |
AT4G35300:CDS:1 | 79 | Chr4: 16798993-16799071 | Arabidopsis thaliana |
AT4G35300:CDS:8.1 | 445 | Chr4: 16796432-16796876 | Arabidopsis thaliana |
AT4G35300:CDS:7.1 | 188 | Chr4: 16796971-16797158 | Arabidopsis thaliana |
AT4G35300:CDS:5.1 | 941 | Chr4: 16797255-16798195 | Arabidopsis thaliana |
AT4G35300:CDS:2.1 | 567 | Chr4: 16798278-16798844 | Arabidopsis thaliana |
AT4G35300:CDS:1.1 | 79 | Chr4: 16798993-16799071 | Arabidopsis thaliana |
AT4G35300:CDS:8.2 | 445 | Chr4: 16796432-16796876 | Arabidopsis thaliana |
AT4G35300:CDS:7.2 | 188 | Chr4: 16796971-16797158 | Arabidopsis thaliana |
AT4G35300:CDS:5.2 | 941 | Chr4: 16797255-16798195 | Arabidopsis thaliana |
AT4G35300:CDS:2.2 | 567 | Chr4: 16798278-16798844 | Arabidopsis thaliana |
AT4G35300:CDS:1.2 | 79 | Chr4: 16798993-16799071 | Arabidopsis thaliana |
AT4G35300:CDS:8.3 | 445 | Chr4: 16796432-16796876 | Arabidopsis thaliana |
AT4G35300:CDS:7.3 | 188 | Chr4: 16796971-16797158 | Arabidopsis thaliana |
AT4G35300:CDS:5.3 | 941 | Chr4: 16797255-16798195 | Arabidopsis thaliana |
AT4G35300:CDS:2.3 | 567 | Chr4: 16798278-16798844 | Arabidopsis thaliana |
AT4G35300:CDS:1.3 | 79 | Chr4: 16798993-16799071 | Arabidopsis thaliana |
AT4G35300:CDS:8.4 | 445 | Chr4: 16796432-16796876 | Arabidopsis thaliana |
AT4G35300:CDS:7.4 | 188 | Chr4: 16796971-16797158 | Arabidopsis thaliana |
AT4G35300:CDS:5.4 | 941 | Chr4: 16797255-16798195 | Arabidopsis thaliana |
AT4G35300:CDS:2.4 | 567 | Chr4: 16798278-16798844 | Arabidopsis thaliana |
AT4G35300:CDS:1.4 | 79 | Chr4: 16798993-16799071 | Arabidopsis thaliana |
AT4G35300:CDS:8.5 | 445 | Chr4: 16796432-16796876 | Arabidopsis thaliana |
AT4G35300:CDS:7.5 | 188 | Chr4: 16796971-16797158 | Arabidopsis thaliana |
AT4G35300:CDS:6 | 260 | Chr4: 16797255-16797514 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G35295:exon:2 | 75 | Chr4: 16795873-16795947 | Arabidopsis thaliana |
AT4G35295:exon:3 | 210 | Chr4: 16796014-16796223 | Arabidopsis thaliana |
AT4G35300:exon:24 | 1102 | Chr4: 16795775-16796876 | Arabidopsis thaliana |
AT4G35300:exon:4 | 353 | Chr4: 16799425-16799777 | Arabidopsis thaliana |
AT4G35300:exon:23 | 1094 | Chr4: 16795783-16796876 | Arabidopsis thaliana |
AT4G35300:exon:9 | 819 | Chr4: 16798993-16799811 | Arabidopsis thaliana |
AT4G35300:exon:22 | 667 | Chr4: 16796210-16796876 | Arabidopsis thaliana |
AT4G35300:exon:7 | 378 | Chr4: 16799290-16799667 | Arabidopsis thaliana |
AT4G35300:exon:6 | 146 | Chr4: 16799408-16799553 | Arabidopsis thaliana |
AT4G35300:exon:3 | 180 | Chr4: 16799456-16799635 | Arabidopsis thaliana |
AT4G35300:exon:5 | 211 | Chr4: 16799425-16799635 | Arabidopsis thaliana |
AT4G35300:exon:8 | 346 | Chr4: 16799290-16799635 | Arabidopsis thaliana |
AT4G35300:exon:15 | 60 | Chr4: 16798278-16798337 | Arabidopsis thaliana |
AT4G35300:exon:13 | 388 | Chr4: 16798457-16798844 | Arabidopsis thaliana |
AT4G35300:exon:12 | 109 | Chr4: 16798993-16799101 | Arabidopsis thaliana |
AT4G35300:exon:2 | 164 | Chr4: 16799614-16799777 | Arabidopsis thaliana |
AT4G35300:exon:21 | 621 | Chr4: 16796256-16796876 | Arabidopsis thaliana |
AT4G35300:exon:17 | 941 | Chr4: 16797255-16798195 | Arabidopsis thaliana |
AT4G35300:exon:11 | 175 | Chr4: 16798993-16799167 | Arabidopsis thaliana |
AT4G35300:exon:1 | 210 | Chr4: 16799614-16799823 | Arabidopsis thaliana |
AT4G35300:exon:20 | 445 | Chr4: 16796432-16796876 | Arabidopsis thaliana |
AT4G35300:exon:19 | 188 | Chr4: 16796971-16797158 | Arabidopsis thaliana |
AT4G35300:exon:18 | 260 | Chr4: 16797255-16797514 | Arabidopsis thaliana |
AT4G35300:exon:16 | 651 | Chr4: 16797545-16798195 | Arabidopsis thaliana |
AT4G35300:exon:14 | 567 | Chr4: 16798278-16798844 | Arabidopsis thaliana |
AT4G35300:exon:10 | 643 | Chr4: 16798993-16799635 | Arabidopsis thaliana |
AT4G09145:exon:1 | 332 | Chr4: 16799635-16799966 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G35300:five_prime_UTR:4 | 353 | Chr4: 16799425-16799777 | Arabidopsis thaliana |
AT4G35300:five_prime_UTR:9 | 740 | Chr4: 16799072-16799811 | Arabidopsis thaliana |
AT4G35300:five_prime_UTR:7 | 378 | Chr4: 16799290-16799667 | Arabidopsis thaliana |
AT4G35300:five_prime_UTR:6 | 146 | Chr4: 16799408-16799553 | Arabidopsis thaliana |
AT4G35300:five_prime_UTR:3 | 180 | Chr4: 16799456-16799635 | Arabidopsis thaliana |
AT4G35300:five_prime_UTR:5 | 211 | Chr4: 16799425-16799635 | Arabidopsis thaliana |
AT4G35300:five_prime_UTR:8 | 346 | Chr4: 16799290-16799635 | Arabidopsis thaliana |
AT4G35300:five_prime_UTR:15 | 5 | Chr4: 16798333-16798337 | Arabidopsis thaliana |
AT4G35300:five_prime_UTR:14 | 388 | Chr4: 16798457-16798844 | Arabidopsis thaliana |
AT4G35300:five_prime_UTR:13 | 109 | Chr4: 16798993-16799101 | Arabidopsis thaliana |
AT4G35300:five_prime_UTR:12 | 30 | Chr4: 16799072-16799101 | Arabidopsis thaliana |
AT4G35300:five_prime_UTR:2 | 164 | Chr4: 16799614-16799777 | Arabidopsis thaliana |
AT4G35300:five_prime_UTR:11 | 96 | Chr4: 16799072-16799167 | Arabidopsis thaliana |
AT4G35300:five_prime_UTR:1 | 210 | Chr4: 16799614-16799823 | Arabidopsis thaliana |
AT4G35300:five_prime_UTR:10 | 564 | Chr4: 16799072-16799635 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT4G35295 | locus:504955502 | AT4G35295 | 891 | Chr4: 16795333-16796223 | A. thaliana | homoserine kinase, putative / HSK;(source:Araport11) | NULL | homoserine kinase, putative / HSK, putative | ||
AT4G09145 | AT4G09145 | 332 | Chr4: 16799635-16799966 | A. thaliana | None;(source:Araport11) | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G35295.1 | 336 | Chr4: 16795333-16796223 |
AT4G35300.6 | 3326 | Chr4: 16795775-16799777 |
AT4G35300.7 | 3609 | Chr4: 16795783-16799811 |
AT4G35300.8 | 2916 | Chr4: 16796210-16799667 |
AT4G35300.11 | 2638 | Chr4: 16796256-16799553 |
AT4G35300.1 | 2672 | Chr4: 16796256-16799635 |
AT4G35300.2 | 2673 | Chr4: 16796256-16799635 |
AT4G35300.9 | 2808 | Chr4: 16796256-16799635 |
AT4G35300.5 | 2471 | Chr4: 16796256-16799777 |
AT4G35300.4 | 2590 | Chr4: 16796256-16799777 |
AT4G35300.10 | 2702 | Chr4: 16796256-16799823 |
AT4G35300.3 | 2754 | Chr4: 16796432-16799635 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G35300:three_prime_UTR:4 | 657 | Chr4: 16795775-16796431 | Arabidopsis thaliana |
AT4G35300:three_prime_UTR:3 | 649 | Chr4: 16795783-16796431 | Arabidopsis thaliana |
AT4G35300:three_prime_UTR:2 | 222 | Chr4: 16796210-16796431 | Arabidopsis thaliana |
AT4G35300:three_prime_UTR:1 | 176 | Chr4: 16796256-16796431 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
MSSP2_ARATH MSSP2_ARATH-3 MSSP2_ARATH-2 | developmental stage | Low levels in germinating seedlings and in young cotyledons (PubMed:17158605). In young roots, restricted to the steles (PubMed:17158605). In mature leaves, confined to the edge areas (PubMed:17158605). Also detected in undeveloped floral side buds, in petals, and in filaments (PubMed:17158605). |
MSSP2_ARATH MSSP2_ARATH-3 MSSP2_ARATH-2 | function | Sugar proton-coupled antiporter which contributes to vacuolar sugar import (e.g. monosaccharides including glucose, sucrose and fructose), particularly during stress responses (e.g. in response to cold). |
F4JMZ7_ARATH A0A178V1T0_ARATH MSSP2_ARATH MSSP2_ARATH-3 MSSP2_ARATH-2 | similarity | Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. |
MSSP2_ARATH MSSP2_ARATH-3 MSSP2_ARATH-2 | tissue specificity | Mostly expressed in roots and stems, and, to a lower extent, in juvenile and adult leaves, and in flower tissues. |
Function
Gene Ontology
cellular component | |
---|---|
plant-type vacuole | ECO |
plant-type vacuole membrane | ECO |
Golgi apparatus | ECO |
plasma membrane | ECO |
molecular function | |
transmembrane transporter activity | ECO |
biological process | |
response to fructose | ECO |
response to sucrose | ECO |
response to glucose | ECO |
response to cold | ECO |
response to salt | ECO |
response to water deprivation | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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