External Links
- Aracyc
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G33810:CDS:7 | 366 | Chr4: 16213324-16213689 | Arabidopsis thaliana |
AT4G33810:CDS:6 | 795 | Chr4: 16213776-16214570 | Arabidopsis thaliana |
AT4G33810:CDS:5 | 99 | Chr4: 16214879-16214977 | Arabidopsis thaliana |
AT4G33810:CDS:4 | 170 | Chr4: 16215056-16215225 | Arabidopsis thaliana |
AT4G33810:CDS:2 | 166 | Chr4: 16215435-16215600 | Arabidopsis thaliana |
AT4G33810:CDS:1 | 114 | Chr4: 16215715-16215828 | Arabidopsis thaliana |
AT4G33810:CDS:7.1 | 366 | Chr4: 16213324-16213689 | Arabidopsis thaliana |
AT4G33810:CDS:6.1 | 795 | Chr4: 16213776-16214570 | Arabidopsis thaliana |
AT4G33810:CDS:5.1 | 99 | Chr4: 16214879-16214977 | Arabidopsis thaliana |
AT4G33810:CDS:4.1 | 170 | Chr4: 16215056-16215225 | Arabidopsis thaliana |
AT4G33810:CDS:2.1 | 166 | Chr4: 16215435-16215600 | Arabidopsis thaliana |
AT4G33810:CDS:1.1 | 114 | Chr4: 16215715-16215828 | Arabidopsis thaliana |
AT4G33810:CDS:7.2 | 366 | Chr4: 16213324-16213689 | Arabidopsis thaliana |
AT4G33810:CDS:6.2 | 795 | Chr4: 16213776-16214570 | Arabidopsis thaliana |
AT4G33810:CDS:5.2 | 99 | Chr4: 16214879-16214977 | Arabidopsis thaliana |
AT4G33810:CDS:4.2 | 170 | Chr4: 16215056-16215225 | Arabidopsis thaliana |
AT4G33810:CDS:2.2 | 166 | Chr4: 16215435-16215600 | Arabidopsis thaliana |
AT4G33810:CDS:1.2 | 114 | Chr4: 16215715-16215828 | Arabidopsis thaliana |
AT4G33810:CDS:7.3 | 366 | Chr4: 16213324-16213689 | Arabidopsis thaliana |
AT4G33810:CDS:6.3 | 795 | Chr4: 16213776-16214570 | Arabidopsis thaliana |
AT4G33810:CDS:5.3 | 99 | Chr4: 16214879-16214977 | Arabidopsis thaliana |
AT4G33810:CDS:4.3 | 170 | Chr4: 16215056-16215225 | Arabidopsis thaliana |
AT4G33810:CDS:3 | 160 | Chr4: 16215435-16215594 | Arabidopsis thaliana |
AT4G33810:CDS:7.4 | 366 | Chr4: 16213324-16213689 | Arabidopsis thaliana |
AT4G33810:CDS:6.4 | 795 | Chr4: 16213776-16214570 | Arabidopsis thaliana |
AT4G33810:CDS:5.4 | 99 | Chr4: 16214879-16214977 | Arabidopsis thaliana |
AT4G33810:CDS:4.4 | 170 | Chr4: 16215056-16215225 | Arabidopsis thaliana |
AT4G33810:CDS:3.1 | 160 | Chr4: 16215435-16215594 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G33810:exon:15 | 516 | Chr4: 16213174-16213689 | Arabidopsis thaliana |
AT4G33810:exon:5 | 156 | Chr4: 16215715-16215870 | Arabidopsis thaliana |
AT4G33810:exon:1 | 237 | Chr4: 16216074-16216310 | Arabidopsis thaliana |
AT4G33810:exon:4 | 165 | Chr4: 16215715-16215879 | Arabidopsis thaliana |
AT4G33810:exon:2 | 224 | Chr4: 16216074-16216297 | Arabidopsis thaliana |
AT4G33810:exon:14 | 500 | Chr4: 16213190-16213689 | Arabidopsis thaliana |
AT4G33810:exon:3 | 583 | Chr4: 16215715-16216297 | Arabidopsis thaliana |
AT4G33810:exon:13 | 497 | Chr4: 16213193-16213689 | Arabidopsis thaliana |
AT4G33810:exon:8 | 160 | Chr4: 16215435-16215594 | Arabidopsis thaliana |
AT4G33810:exon:12 | 366 | Chr4: 16213324-16213689 | Arabidopsis thaliana |
AT4G33810:exon:11 | 795 | Chr4: 16213776-16214570 | Arabidopsis thaliana |
AT4G33810:exon:10 | 99 | Chr4: 16214879-16214977 | Arabidopsis thaliana |
AT4G33810:exon:9 | 170 | Chr4: 16215056-16215225 | Arabidopsis thaliana |
AT4G33810:exon:7 | 166 | Chr4: 16215435-16215600 | Arabidopsis thaliana |
AT4G33810:exon:6 | 78 | Chr4: 16215715-16215792 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G33810:five_prime_UTR:5 | 42 | Chr4: 16215829-16215870 | Arabidopsis thaliana |
AT4G33810:five_prime_UTR:1 | 237 | Chr4: 16216074-16216310 | Arabidopsis thaliana |
AT4G33810:five_prime_UTR:4 | 51 | Chr4: 16215829-16215879 | Arabidopsis thaliana |
AT4G33810:five_prime_UTR:2 | 224 | Chr4: 16216074-16216297 | Arabidopsis thaliana |
AT4G33810:five_prime_UTR:3 | 469 | Chr4: 16215829-16216297 | Arabidopsis thaliana |
AT4G33810:five_prime_UTR:7 | 6 | Chr4: 16215595-16215600 | Arabidopsis thaliana |
AT4G33810:five_prime_UTR:6 | 78 | Chr4: 16215715-16215792 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G33810.2 | 2139 | Chr4: 16213174-16216310 |
AT4G33810.4 | 2119 | Chr4: 16213190-16216297 |
AT4G33810.3 | 2313 | Chr4: 16213190-16216297 |
AT4G33810.1 | 1721 | Chr4: 16213193-16215594 |
AT4G33810.5 | 1674 | Chr4: 16213324-16215792 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G33810:three_prime_UTR:3 | 150 | Chr4: 16213174-16213323 | Arabidopsis thaliana |
AT4G33810:three_prime_UTR:2 | 134 | Chr4: 16213190-16213323 | Arabidopsis thaliana |
AT4G33810:three_prime_UTR:1 | 131 | Chr4: 16213193-16213323 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
XYN5_ARATH XYN5_ARATH-2 | function | Binds to and hydrolyzes insoluble and soluble xylan substrates. |
XYN5_ARATH XYN5_ARATH-2 | pathway | Glycan degradation; xylan degradation. |
XYN5_ARATH XYN5_ARATH-2 | similarity | Belongs to the glycosyl hydrolase 10 (cellulase F) family. |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
endo-1,4-beta-xylanase activity | ECO |
biological process | |
xylan catabolic process | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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