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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G30560:CDS:7 | 672 | Chr4: 14926974-14927645 | Arabidopsis thaliana |
AT4G30560:CDS:6 | 349 | Chr4: 14927729-14928077 | Arabidopsis thaliana |
AT4G30560:CDS:5 | 311 | Chr4: 14928162-14928472 | Arabidopsis thaliana |
AT4G30560:CDS:4 | 213 | Chr4: 14928563-14928775 | Arabidopsis thaliana |
AT4G30560:CDS:2 | 589 | Chr4: 14928877-14929465 | Arabidopsis thaliana |
AT4G30560:CDS:1 | 68 | Chr4: 14929614-14929681 | Arabidopsis thaliana |
AT4G30560:CDS:7.1 | 672 | Chr4: 14926974-14927645 | Arabidopsis thaliana |
AT4G30560:CDS:6.1 | 349 | Chr4: 14927729-14928077 | Arabidopsis thaliana |
AT4G30560:CDS:5.1 | 311 | Chr4: 14928162-14928472 | Arabidopsis thaliana |
AT4G30560:CDS:4.1 | 213 | Chr4: 14928563-14928775 | Arabidopsis thaliana |
AT4G30560:CDS:3 | 579 | Chr4: 14928877-14929455 | Arabidopsis thaliana |
AT4G30560:CDS:7.2 | 672 | Chr4: 14926974-14927645 | Arabidopsis thaliana |
AT4G30560:CDS:6.2 | 349 | Chr4: 14927729-14928077 | Arabidopsis thaliana |
AT4G30560:CDS:5.2 | 311 | Chr4: 14928162-14928472 | Arabidopsis thaliana |
AT4G30560:CDS:4.2 | 213 | Chr4: 14928563-14928775 | Arabidopsis thaliana |
AT4G30560:CDS:3.1 | 579 | Chr4: 14928877-14929455 | Arabidopsis thaliana |
AT4G30560:CDS:7.3 | 672 | Chr4: 14926974-14927645 | Arabidopsis thaliana |
AT4G30560:CDS:6.3 | 349 | Chr4: 14927729-14928077 | Arabidopsis thaliana |
AT4G30560:CDS:5.3 | 311 | Chr4: 14928162-14928472 | Arabidopsis thaliana |
AT4G30560:CDS:4.3 | 213 | Chr4: 14928563-14928775 | Arabidopsis thaliana |
AT4G30560:CDS:2.1 | 589 | Chr4: 14928877-14929465 | Arabidopsis thaliana |
AT4G30560:CDS:1.1 | 68 | Chr4: 14929614-14929681 | Arabidopsis thaliana |
AT4G30560:CDS:7.4 | 672 | Chr4: 14926974-14927645 | Arabidopsis thaliana |
AT4G30560:CDS:6.4 | 349 | Chr4: 14927729-14928077 | Arabidopsis thaliana |
AT4G30560:CDS:5.4 | 311 | Chr4: 14928162-14928472 | Arabidopsis thaliana |
AT4G30560:CDS:4.4 | 213 | Chr4: 14928563-14928775 | Arabidopsis thaliana |
AT4G30560:CDS:3.2 | 579 | Chr4: 14928877-14929455 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G30550:exon:3 | 244 | Chr4: 14926618-14926861 | Arabidopsis thaliana |
AT4G30560:exon:12 | 812 | Chr4: 14926834-14927645 | Arabidopsis thaliana |
AT4G30560:exon:6 | 608 | Chr4: 14928877-14929484 | Arabidopsis thaliana |
AT4G30560:exon:5 | 644 | Chr4: 14928877-14929520 | Arabidopsis thaliana |
AT4G30560:exon:7 | 589 | Chr4: 14928877-14929465 | Arabidopsis thaliana |
AT4G30560:exon:3 | 104 | Chr4: 14929614-14929717 | Arabidopsis thaliana |
AT4G30560:exon:2 | 352 | Chr4: 14930003-14930354 | Arabidopsis thaliana |
AT4G30560:exon:11 | 672 | Chr4: 14926974-14927645 | Arabidopsis thaliana |
AT4G30560:exon:10 | 349 | Chr4: 14927729-14928077 | Arabidopsis thaliana |
AT4G30560:exon:9 | 311 | Chr4: 14928162-14928472 | Arabidopsis thaliana |
AT4G30560:exon:8 | 213 | Chr4: 14928563-14928775 | Arabidopsis thaliana |
AT4G30560:exon:4 | 841 | Chr4: 14928877-14929717 | Arabidopsis thaliana |
AT4G30560:exon:1 | 216 | Chr4: 14930140-14930355 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G30560:five_prime_UTR:7 | 29 | Chr4: 14929456-14929484 | Arabidopsis thaliana |
AT4G30560:five_prime_UTR:4 | 104 | Chr4: 14929614-14929717 | Arabidopsis thaliana |
AT4G30560:five_prime_UTR:6 | 65 | Chr4: 14929456-14929520 | Arabidopsis thaliana |
AT4G30560:five_prime_UTR:3 | 36 | Chr4: 14929682-14929717 | Arabidopsis thaliana |
AT4G30560:five_prime_UTR:2 | 352 | Chr4: 14930003-14930354 | Arabidopsis thaliana |
AT4G30560:five_prime_UTR:5 | 262 | Chr4: 14929456-14929717 | Arabidopsis thaliana |
AT4G30560:five_prime_UTR:1 | 216 | Chr4: 14930140-14930355 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT4G30550 | locus:2118831 | GGP3 | gamma-glutamyl peptidase 3 | 1455 | Chr4: 14925407-14926861 | A. thaliana | Class I glutamine amidotransferase-like superfamily protein;(source:Araport11) | NULL | Class I glutamine amidotransferase-like superfamily protein | GGP3 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G30550.1 | 1109 | Chr4: 14925407-14926861 |
AT4G30560.1 | 2594 | Chr4: 14926834-14930355 |
AT4G30560.2 | 2613 | Chr4: 14926834-14930355 |
AT4G30560.5 | 2189 | Chr4: 14926974-14929520 |
AT4G30560.4 | 2590 | Chr4: 14926974-14930354 |
AT4G30560.3 | 2602 | Chr4: 14926974-14930355 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G30550:three_prime_UTR:1 | 148 | Chr4: 14926714-14926861 | Arabidopsis thaliana |
AT4G30560:three_prime_UTR:1 | 140 | Chr4: 14926834-14926973 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
CNGC9_ARATH | function | Putative cyclic nucleotide-gated ion channel. |
CNGC9_ARATH F4JQC2_ARATH | similarity | Belongs to the cyclic nucleotide-gated cation channel (TC 1.A.1.5) family. |
Function
Gene Ontology
cellular component | |
---|---|
plasma membrane | ECO |
molecular function | |
calmodulin binding | ECO |
cAMP binding | ECO |
calcium channel activity | ECO |
cGMP binding | ECO |
voltage-gated potassium channel activity | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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