help  | faq  | software  | BAR
Hide

Oops!

Error: 403

Gene : AT4G30330 A. thaliana

DB identifier  ? AT4G30330 Secondary Identifier  ? locus:2118781
Brief Description  Small nuclear ribonucleoprotein family protein
TAIR Computational Description  Small nuclear ribonucleoprotein family protein;(source:Araport11)
TAIR Curator Summary  Differs from PCP only in two amino acids, expression is regulated in a manner opposite to that of PCP in that it was upregulated in response to increasing ambient temperature.
TAIR Short Description  Small nuclear ribonucleoprotein family protein
TAIR Aliases  PCP-like, SME2

0 Gene Rifs

1 Organism

9 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 1602  
Location: Chr4:14836548-14838149 reverse strand

Gene models - AT4G30330 AT4G30330

? Gene models

Transcripts: 1  Exons: 6  Introns: 5 

Overlapping Features

? Genome features that overlap coordinates of this Gene

7 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
A0A178UZU6_ARATH function Plays a role in pre-mRNA splicing as a core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.
A0A178UZU6_ARATH similarity Belongs to the snRNP Sm proteins family.

1 Proteins

Function

Gene Ontology

cellular component
U1 snRNP  ? ECO  
U2 snRNP  ? ECO  
U4 snRNP  ? ECO  
spliceosomal complex  ? ECO  
U4/U6 x U5 tri-snRNP complex  ? ECO  
U5 snRNP  ? ECO  
molecular function
RNA binding  ? ECO  
biological process
spliceosomal snRNP assembly  ? ECO  

Interactions

Interaction Network

Show the following interaction types:
Reset view
Show in table format
Export graph

Click on a gene to get more info about it.

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

8 Data Sets