External Links
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- Plant Proteome Database
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- GeneVisible
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 24, Exons: 15, Five Prime UTRs: 2, Gene: 1, mRNAs: 3, Three Prime UTRs: 2, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G28070:CDS:1 | 246 | Chr4: 13946009-13946254 | Arabidopsis thaliana |
AT4G28070:CDS:2 | 224 | Chr4: 13946328-13946551 | Arabidopsis thaliana |
AT4G28070:CDS:3 | 70 | Chr4: 13946628-13946697 | Arabidopsis thaliana |
AT4G28070:CDS:4 | 87 | Chr4: 13946789-13946875 | Arabidopsis thaliana |
AT4G28070:CDS:5 | 66 | Chr4: 13946959-13947024 | Arabidopsis thaliana |
AT4G28070:CDS:6 | 93 | Chr4: 13947133-13947225 | Arabidopsis thaliana |
AT4G28070:CDS:7 | 57 | Chr4: 13947327-13947383 | Arabidopsis thaliana |
AT4G28070:CDS:8 | 129 | Chr4: 13947469-13947597 | Arabidopsis thaliana |
AT4G28070:CDS:9 | 91 | Chr4: 13947771-13947861 | Arabidopsis thaliana |
AT4G28070:CDS:11 | 62 | Chr4: 13947977-13948038 | Arabidopsis thaliana |
AT4G28070:CDS:12 | 194 | Chr4: 13948122-13948315 | Arabidopsis thaliana |
AT4G28070:CDS:13 | 76 | Chr4: 13948387-13948462 | Arabidopsis thaliana |
AT4G28070:CDS:1.1 | 246 | Chr4: 13946009-13946254 | Arabidopsis thaliana |
AT4G28070:CDS:2.1 | 224 | Chr4: 13946328-13946551 | Arabidopsis thaliana |
AT4G28070:CDS:3.1 | 70 | Chr4: 13946628-13946697 | Arabidopsis thaliana |
AT4G28070:CDS:4.1 | 87 | Chr4: 13946789-13946875 | Arabidopsis thaliana |
AT4G28070:CDS:5.1 | 66 | Chr4: 13946959-13947024 | Arabidopsis thaliana |
AT4G28070:CDS:6.1 | 93 | Chr4: 13947133-13947225 | Arabidopsis thaliana |
AT4G28070:CDS:7.1 | 57 | Chr4: 13947327-13947383 | Arabidopsis thaliana |
AT4G28070:CDS:8.1 | 129 | Chr4: 13947469-13947597 | Arabidopsis thaliana |
AT4G28070:CDS:9.1 | 91 | Chr4: 13947771-13947861 | Arabidopsis thaliana |
AT4G28070:CDS:10 | 89 | Chr4: 13947950-13948038 | Arabidopsis thaliana |
AT4G28070:CDS:12.1 | 194 | Chr4: 13948122-13948315 | Arabidopsis thaliana |
AT4G28070:CDS:13.1 | 76 | Chr4: 13948387-13948462 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G28070:exon:1 | 363 | Chr4: 13945892-13946254 | Arabidopsis thaliana |
AT4G28070:exon:12 | 62 | Chr4: 13947977-13948038 | Arabidopsis thaliana |
AT4G28070:exon:2 | 337 | Chr4: 13945918-13946254 | Arabidopsis thaliana |
AT4G28070:exon:3 | 224 | Chr4: 13946328-13946551 | Arabidopsis thaliana |
AT4G28070:exon:4 | 70 | Chr4: 13946628-13946697 | Arabidopsis thaliana |
AT4G28070:exon:5 | 87 | Chr4: 13946789-13946875 | Arabidopsis thaliana |
AT4G28070:exon:6 | 66 | Chr4: 13946959-13947024 | Arabidopsis thaliana |
AT4G28070:exon:7 | 93 | Chr4: 13947133-13947225 | Arabidopsis thaliana |
AT4G28070:exon:8 | 57 | Chr4: 13947327-13947383 | Arabidopsis thaliana |
AT4G28070:exon:9 | 129 | Chr4: 13947469-13947597 | Arabidopsis thaliana |
AT4G28070:exon:10 | 91 | Chr4: 13947771-13947861 | Arabidopsis thaliana |
AT4G28070:exon:11 | 89 | Chr4: 13947950-13948038 | Arabidopsis thaliana |
AT4G28070:exon:13 | 194 | Chr4: 13948122-13948315 | Arabidopsis thaliana |
AT4G28070:exon:14 | 241 | Chr4: 13948387-13948627 | Arabidopsis thaliana |
AT4G28080:exon:23 | 2352 | Chr4: 13948603-13950954 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G28070:five_prime_UTR:1 | 117 | Chr4: 13945892-13946008 | Arabidopsis thaliana |
AT4G28070:five_prime_UTR:2 | 91 | Chr4: 13945918-13946008 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT4G28080 | locus:2133012 | AT4G28080 | 9505 | Chr4: 13948603-13958107 | A. thaliana | Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11) | Encodes REDUCED CHLOROPLAST COVERAGE 2 (REC2). Along with REC1 and REC3 it contributes to establishing the size of the chloroplast compartment. | Tetratricopeptide repeat (TPR)-like superfamily protein | REC2 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G28070.1 | 1677 | Chr4: 13945892-13948627 |
AT4G28070.2 | 1678 | Chr4: 13945918-13948627 |
AT4G28080.1 | 6117 | Chr4: 13948603-13958107 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G28070:three_prime_UTR:1 | 165 | Chr4: 13948463-13948627 | Arabidopsis thaliana |
AT4G28080:three_prime_UTR:1 | 390 | Chr4: 13948603-13948992 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE65840 | 266 | Chr4: 13945905-13946170 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE65840:transposon_fragment:1 | 266 | Chr4: 13945905-13946170 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
F4JKH5_ARATH A0A654FTH3_ARATH | similarity | Belongs to the AFG1 ATPase family. |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
ATP binding | ECO |
ATP hydrolysis activity | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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