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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G28020:CDS:11 | 240 | Chr4: 13933389-13933628 | Arabidopsis thaliana |
AT4G28020:CDS:9 | 81 | Chr4: 13933699-13933779 | Arabidopsis thaliana |
AT4G28020:CDS:8 | 75 | Chr4: 13933927-13934001 | Arabidopsis thaliana |
AT4G28020:CDS:7 | 60 | Chr4: 13934080-13934139 | Arabidopsis thaliana |
AT4G28020:CDS:6 | 93 | Chr4: 13934229-13934321 | Arabidopsis thaliana |
AT4G28020:CDS:5 | 196 | Chr4: 13934399-13934594 | Arabidopsis thaliana |
AT4G28020:CDS:4 | 41 | Chr4: 13934688-13934728 | Arabidopsis thaliana |
AT4G28020:CDS:11.1 | 240 | Chr4: 13933389-13933628 | Arabidopsis thaliana |
AT4G28020:CDS:9.1 | 81 | Chr4: 13933699-13933779 | Arabidopsis thaliana |
AT4G28020:CDS:8.1 | 75 | Chr4: 13933927-13934001 | Arabidopsis thaliana |
AT4G28020:CDS:7.1 | 60 | Chr4: 13934080-13934139 | Arabidopsis thaliana |
AT4G28020:CDS:6.1 | 93 | Chr4: 13934229-13934321 | Arabidopsis thaliana |
AT4G28020:CDS:5.1 | 196 | Chr4: 13934399-13934594 | Arabidopsis thaliana |
AT4G28020:CDS:3 | 101 | Chr4: 13934688-13934788 | Arabidopsis thaliana |
AT4G28020:CDS:2 | 122 | Chr4: 13934938-13935059 | Arabidopsis thaliana |
AT4G28020:CDS:1 | 88 | Chr4: 13935162-13935249 | Arabidopsis thaliana |
AT4G28020:CDS:11.2 | 240 | Chr4: 13933389-13933628 | Arabidopsis thaliana |
AT4G28020:CDS:9.2 | 81 | Chr4: 13933699-13933779 | Arabidopsis thaliana |
AT4G28020:CDS:8.2 | 75 | Chr4: 13933927-13934001 | Arabidopsis thaliana |
AT4G28020:CDS:7.2 | 60 | Chr4: 13934080-13934139 | Arabidopsis thaliana |
AT4G28020:CDS:6.2 | 93 | Chr4: 13934229-13934321 | Arabidopsis thaliana |
AT4G28020:CDS:5.2 | 196 | Chr4: 13934399-13934594 | Arabidopsis thaliana |
AT4G28020:CDS:4.1 | 41 | Chr4: 13934688-13934728 | Arabidopsis thaliana |
AT4G28020:CDS:10 | 96 | Chr4: 13933684-13933779 | Arabidopsis thaliana |
AT4G28020:CDS:8.3 | 75 | Chr4: 13933927-13934001 | Arabidopsis thaliana |
AT4G28020:CDS:7.3 | 60 | Chr4: 13934080-13934139 | Arabidopsis thaliana |
AT4G28020:CDS:6.3 | 93 | Chr4: 13934229-13934321 | Arabidopsis thaliana |
AT4G28020:CDS:5.3 | 196 | Chr4: 13934399-13934594 | Arabidopsis thaliana |
AT4G28020:CDS:3.1 | 101 | Chr4: 13934688-13934788 | Arabidopsis thaliana |
AT4G28020:CDS:2.1 | 122 | Chr4: 13934938-13935059 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G28010:exon:1 | 2929 | Chr4: 13930342-13933270 | Arabidopsis thaliana |
AT4G28020:exon:5 | 249 | Chr4: 13934688-13934936 | Arabidopsis thaliana |
AT4G28020:exon:1 | 318 | Chr4: 13935162-13935479 | Arabidopsis thaliana |
AT4G28020:exon:13 | 397 | Chr4: 13933232-13933628 | Arabidopsis thaliana |
AT4G28020:exon:11 | 81 | Chr4: 13933699-13933779 | Arabidopsis thaliana |
AT4G28020:exon:3 | 542 | Chr4: 13934938-13935479 | Arabidopsis thaliana |
AT4G28020:exon:12 | 147 | Chr4: 13933633-13933779 | Arabidopsis thaliana |
AT4G28020:exon:10 | 75 | Chr4: 13933927-13934001 | Arabidopsis thaliana |
AT4G28020:exon:9 | 60 | Chr4: 13934080-13934139 | Arabidopsis thaliana |
AT4G28020:exon:8 | 93 | Chr4: 13934229-13934321 | Arabidopsis thaliana |
AT4G28020:exon:7 | 196 | Chr4: 13934399-13934594 | Arabidopsis thaliana |
AT4G28020:exon:6 | 101 | Chr4: 13934688-13934788 | Arabidopsis thaliana |
AT4G28020:exon:4 | 122 | Chr4: 13934938-13935059 | Arabidopsis thaliana |
AT4G28020:exon:2 | 247 | Chr4: 13935162-13935408 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G28020:five_prime_UTR:4 | 208 | Chr4: 13934729-13934936 | Arabidopsis thaliana |
AT4G28020:five_prime_UTR:1 | 230 | Chr4: 13935250-13935479 | Arabidopsis thaliana |
AT4G28020:five_prime_UTR:5 | 60 | Chr4: 13934729-13934788 | Arabidopsis thaliana |
AT4G28020:five_prime_UTR:3 | 542 | Chr4: 13934938-13935479 | Arabidopsis thaliana |
AT4G28020:five_prime_UTR:2 | 159 | Chr4: 13935250-13935408 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT4G28010 | locus:2132937 | AT4G28010 | 2929 | Chr4: 13930342-13933270 | A. thaliana | Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11) | PPRP involved in processing of nad6,atp9 and 26S RNAs. | Tetratricopeptide repeat (TPR)-like superfamily protein | RPF5 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G28010.1 | 2929 | Chr4: 13930342-13933270 |
AT4G28020.3 | 1151 | Chr4: 13933232-13934936 |
AT4G28020.1 | 1443 | Chr4: 13933232-13935479 |
AT4G28020.2 | 1545 | Chr4: 13933232-13935479 |
AT4G28020.4 | 1041 | Chr4: 13933633-13935408 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G28010:three_prime_UTR:1 | 777 | Chr4: 13932494-13933270 | Arabidopsis thaliana |
AT4G28020:three_prime_UTR:2 | 157 | Chr4: 13933232-13933388 | Arabidopsis thaliana |
AT4G28020:three_prime_UTR:1 | 51 | Chr4: 13933633-13933683 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
A0A178UZQ0_ARATH A0A1P8B5H4_ARATH A0A1P8B5H2_ARATH | similarity | Belongs to the tRNA methyltransferase O family. |
Function
Gene Ontology
cellular component | |
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No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...