External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
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- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNAs: 4, CDSs: 7, Exons: 14, Five Prime UTR: 1, Gene: 1, mRNA: 1, Transposable Elements: 2, Transposon Fragments: 2
Antisense lncRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G27852.1 | 1423 | Chr4: 13872023-13873700 |
AT4G27852.2 | 1157 | Chr4: 13872040-13873526 |
AT4G27852.3 | 1589 | Chr4: 13872079-13873907 |
AT4G27852.4 | 450 | Chr4: 13873075-13873794 |
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G27850:CDS:1 | 76 | Chr4: 13870382-13870457 | Arabidopsis thaliana |
AT4G27850:CDS:2 | 273 | Chr4: 13870855-13871127 | Arabidopsis thaliana |
AT4G27850:CDS:3 | 663 | Chr4: 13871307-13871969 | Arabidopsis thaliana |
AT4G27850:CDS:4 | 221 | Chr4: 13872057-13872277 | Arabidopsis thaliana |
AT4G27850:CDS:5 | 56 | Chr4: 13872396-13872451 | Arabidopsis thaliana |
AT4G27850:CDS:6 | 204 | Chr4: 13872534-13872737 | Arabidopsis thaliana |
AT4G27850:CDS:7 | 241 | Chr4: 13873269-13873509 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G27850:exon:1 | 82 | Chr4: 13870376-13870457 | Arabidopsis thaliana |
AT4G27850:exon:2 | 273 | Chr4: 13870855-13871127 | Arabidopsis thaliana |
AT4G27850:exon:3 | 663 | Chr4: 13871307-13871969 | Arabidopsis thaliana |
AT4G27850:exon:4 | 221 | Chr4: 13872057-13872277 | Arabidopsis thaliana |
AT4G27850:exon:5 | 56 | Chr4: 13872396-13872451 | Arabidopsis thaliana |
AT4G27850:exon:6 | 204 | Chr4: 13872534-13872737 | Arabidopsis thaliana |
AT4G27850:exon:7 | 241 | Chr4: 13873269-13873509 | Arabidopsis thaliana |
AT4G27852:exon:9 | 881 | Chr4: 13872023-13872903 | Arabidopsis thaliana |
AT4G27852:exon:3 | 542 | Chr4: 13873159-13873700 | Arabidopsis thaliana |
AT4G27852:exon:8 | 689 | Chr4: 13872040-13872728 | Arabidopsis thaliana |
AT4G27852:exon:6 | 100 | Chr4: 13872804-13872903 | Arabidopsis thaliana |
AT4G27852:exon:4 | 368 | Chr4: 13873159-13873526 | Arabidopsis thaliana |
AT4G27852:exon:7 | 1441 | Chr4: 13872079-13873519 | Arabidopsis thaliana |
AT4G27852:exon:5 | 415 | Chr4: 13873075-13873489 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G27850:five_prime_UTR:1 | 6 | Chr4: 13870376-13870381 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT4G27852 | locus:6530298221 | AT4G27852 | 1885 | Chr4: 13872023-13873907 | A. thaliana | Natural antisense transcript overlaps with AT4G27850 and AT4G27860;(source:Araport11) | NULL | NULL |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE65430 | 269 | Chr4: 13871405-13871673 | Arabidopsis thaliana |
AT4TE65435 | 21 | Chr4: 13871674-13871694 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE65430:transposon_fragment:1 | 269 | Chr4: 13871405-13871673 | Arabidopsis thaliana |
AT4TE65435:transposon_fragment:1 | 21 | Chr4: 13871674-13871694 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
membrane | ECO |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...