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Gene : PEL1 A. thaliana

DB identifier  ? AT4G27650 Secondary Identifier  ? locus:2137732
Name  ? PELOTA Brief Description  Eukaryotic release factor 1 (eRF1) family protein
TAIR Computational Description  Eukaryotic release factor 1 (eRF1) family protein;(source:Araport11)
TAIR Curator Summary  Encodes Arabidopsis homolog of Drosophila pelota protein. Functions in RNA the non-stop decay (NSD) and no-go decay (NGD) quality control systems that act during translation.
TAIR Short Description  Eukaryotic release factor 1 (eRF1) family protein
TAIR Aliases  PEL1

2 Gene Rifs

1 Organism

11 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 4764  
Location: Chr4:13803268-13808031 reverse strand

Gene models - PEL1 AT4G27650

? Gene models

Transcripts: 3  Exons: 50  Introns: 47 

Overlapping Features

? Genome features that overlap coordinates of this Gene

24 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
PEL1_ARATH-2 PEL1_ARATH function Component of the Pelota-HBS1L complex, a complex that recognizes stalled ribosomes and triggers the No-Go Decay (NGD) pathway. In the Pelota-HBS1L complex, pelo recognizes ribosomes stalled at the 3' end of an mRNA and engages stalled ribosomes by destabilizing mRNA in the mRNA channel. Following ribosome-binding, the Pelota-HBS1L complex promotes the disassembly of stalled ribosomes, followed by degradation of damaged mRNAs as part of the NGD pathway.
PEL1_ARATH-2 PEL1_ARATH similarity Belongs to the eukaryotic release factor 1 family. Pelota subfamily.
PEL1_ARATH-2 PEL1_ARATH tissue specificity Expressed constitutively in seedlings, buds, stems, leaves and roots.

2 Proteins

Function

Gene Ontology

cellular component
nucleus  ? ECO  
cytoplasm  ? ECO  
molecular function
metal ion binding  ? ECO  
biological process
nuclear-transcribed mRNA catabolic process, non-stop decay  ? ECO  
RNA surveillance  ? ECO  
nuclear-transcribed mRNA catabolic process, no-go decay  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets