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Gene : AT4G27340 A. thaliana

DB identifier  ? AT4G27340 Secondary Identifier  ? locus:2131744
Brief Description  Met-10 like family protein
TAIR Computational Description  Met-10+ like family protein;(source:Araport11)
TAIR Curator Summary  NULL
TAIR Short Description  Met-10+ like family protein
TAIR Aliases  AtTRM5b, TRM5b

0 Gene Rifs

1 Organism

5 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 3365  
Location: Chr4:13687174-13690538 reverse strand

Gene models - AT4G27340 AT4G27340

? Gene models

Transcripts: 3  Exons: 21  Introns: 18 

Overlapping Features

? Genome features that overlap coordinates of this Gene

16 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
TRM52_ARATH A0A1P8B968_ARATH function Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding.
TRM52_ARATH A0A1P8B968_ARATH similarity Belongs to the class I-like SAM-binding methyltransferase superfamily. TRM5/TYW2 family.
A0A1P8B968_ARATH similarity Belongs to the TRM5 / TYW2 family.
TRM52_ARATH A0A1P8B968_ARATH subcellular location Predominantly in the mitochondria and in the nucleus.

3 Proteins

Function

Gene Ontology

cellular component
nucleus  ? ECO  
mitochondrial matrix  ? ECO  
molecular function
tRNA (guanine(37)-N1)-methyltransferase activity  ? ECO  
biological process
tRNA methylation  ? ECO  

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets