External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNA: 1, CDSs: 20, Exons: 13, Five Prime UTRs: 4, Genes: 2, mRNAs: 4, Three Prime UTRs: 2, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G26480:CDS:8 | 147 | Chr4: 13372885-13373031 | Arabidopsis thaliana |
AT4G26480:CDS:7 | 144 | Chr4: 13373124-13373267 | Arabidopsis thaliana |
AT4G26480:CDS:6 | 117 | Chr4: 13373350-13373466 | Arabidopsis thaliana |
AT4G26480:CDS:5 | 114 | Chr4: 13373542-13373655 | Arabidopsis thaliana |
AT4G26480:CDS:4 | 140 | Chr4: 13374133-13374272 | Arabidopsis thaliana |
AT4G26480:CDS:2 | 86 | Chr4: 13374883-13374968 | Arabidopsis thaliana |
AT4G26480:CDS:1 | 179 | Chr4: 13375615-13375793 | Arabidopsis thaliana |
AT4G26480:CDS:8.1 | 147 | Chr4: 13372885-13373031 | Arabidopsis thaliana |
AT4G26480:CDS:7.1 | 144 | Chr4: 13373124-13373267 | Arabidopsis thaliana |
AT4G26480:CDS:6.1 | 117 | Chr4: 13373350-13373466 | Arabidopsis thaliana |
AT4G26480:CDS:5.1 | 114 | Chr4: 13373542-13373655 | Arabidopsis thaliana |
AT4G26480:CDS:4.1 | 140 | Chr4: 13374133-13374272 | Arabidopsis thaliana |
AT4G26480:CDS:2.1 | 86 | Chr4: 13374883-13374968 | Arabidopsis thaliana |
AT4G26480:CDS:1.1 | 179 | Chr4: 13375615-13375793 | Arabidopsis thaliana |
AT4G26480:CDS:8.2 | 147 | Chr4: 13372885-13373031 | Arabidopsis thaliana |
AT4G26480:CDS:7.2 | 144 | Chr4: 13373124-13373267 | Arabidopsis thaliana |
AT4G26480:CDS:6.2 | 117 | Chr4: 13373350-13373466 | Arabidopsis thaliana |
AT4G26480:CDS:5.2 | 114 | Chr4: 13373542-13373655 | Arabidopsis thaliana |
AT4G26480:CDS:4.2 | 140 | Chr4: 13374133-13374272 | Arabidopsis thaliana |
AT4G26480:CDS:3 | 10 | Chr4: 13374883-13374892 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G26470:exon:6 | 497 | Chr4: 13371964-13372460 | Arabidopsis thaliana |
AT4G26480:exon:11 | 610 | Chr4: 13372422-13373031 | Arabidopsis thaliana |
AT4G26480:exon:2 | 622 | Chr4: 13375615-13376236 | Arabidopsis thaliana |
AT4G26480:exon:5 | 86 | Chr4: 13374883-13374968 | Arabidopsis thaliana |
AT4G26480:exon:3 | 485 | Chr4: 13375615-13376099 | Arabidopsis thaliana |
AT4G26480:exon:10 | 147 | Chr4: 13372885-13373031 | Arabidopsis thaliana |
AT4G26480:exon:9 | 144 | Chr4: 13373124-13373267 | Arabidopsis thaliana |
AT4G26480:exon:8 | 117 | Chr4: 13373350-13373466 | Arabidopsis thaliana |
AT4G26480:exon:7 | 114 | Chr4: 13373542-13373655 | Arabidopsis thaliana |
AT4G26480:exon:6 | 140 | Chr4: 13374133-13374272 | Arabidopsis thaliana |
AT4G26480:exon:4 | 1354 | Chr4: 13374883-13376236 | Arabidopsis thaliana |
AT4G26480:exon:1 | 9 | Chr4: 13376324-13376332 | Arabidopsis thaliana |
AT4G07655:exon:1 | 226 | Chr4: 13375093-13375318 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G26480:five_prime_UTR:2 | 443 | Chr4: 13375794-13376236 | Arabidopsis thaliana |
AT4G26480:five_prime_UTR:3 | 306 | Chr4: 13375794-13376099 | Arabidopsis thaliana |
AT4G26480:five_prime_UTR:4 | 1344 | Chr4: 13374893-13376236 | Arabidopsis thaliana |
AT4G26480:five_prime_UTR:1 | 9 | Chr4: 13376324-13376332 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT4G26470 | locus:2131458 | AT4G26470 | 1510 | Chr4: 13370951-13372460 | A. thaliana | Calcium-binding EF-hand family protein;(source:Araport11) | NULL | Calcium-binding EF-hand family protein | ||
AT4G07655 | AT4G07655 | 226 | Chr4: 13375093-13375318 | A. thaliana | Natural antisense transcript overlaps with AT4G26480;(source:Araport11) | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G26470.2 | 1161 | Chr4: 13370951-13372460 |
AT4G26480.1 | 1842 | Chr4: 13372422-13376332 |
AT4G26480.3 | 1233 | Chr4: 13372885-13376099 |
AT4G26480.2 | 2025 | Chr4: 13372885-13376332 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G26470:three_prime_UTR:1 | 263 | Chr4: 13372198-13372460 | Arabidopsis thaliana |
AT4G26480:three_prime_UTR:1 | 463 | Chr4: 13372422-13372884 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE62865 | 277 | Chr4: 13374710-13374986 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE62865:transposon_fragment:1 | 277 | Chr4: 13374710-13374986 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
nucleus | ECO |
molecular function | |
RNA binding | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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