External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 13, Exons: 11, Five Prime UTRs: 4, mRNAs: 3, Transposable Elements: 3, Transposable Element Gene: 1, Transposon Fragments: 3
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G22410:CDS:8 | 101 | Chr4: 11818033-11818133 | Arabidopsis thaliana |
AT4G22410:CDS:7 | 172 | Chr4: 11818227-11818398 | Arabidopsis thaliana |
AT4G22410:CDS:6 | 138 | Chr4: 11818776-11818913 | Arabidopsis thaliana |
AT4G22410:CDS:5 | 168 | Chr4: 11819009-11819176 | Arabidopsis thaliana |
AT4G22410:CDS:4 | 186 | Chr4: 11819269-11819454 | Arabidopsis thaliana |
AT4G22410:CDS:2 | 85 | Chr4: 11819530-11819614 | Arabidopsis thaliana |
AT4G22410:CDS:1 | 260 | Chr4: 11819876-11820135 | Arabidopsis thaliana |
AT4G22410:CDS:8.1 | 101 | Chr4: 11818033-11818133 | Arabidopsis thaliana |
AT4G22410:CDS:7.1 | 172 | Chr4: 11818227-11818398 | Arabidopsis thaliana |
AT4G22410:CDS:6.1 | 138 | Chr4: 11818776-11818913 | Arabidopsis thaliana |
AT4G22410:CDS:5.1 | 168 | Chr4: 11819009-11819176 | Arabidopsis thaliana |
AT4G22410:CDS:4.1 | 186 | Chr4: 11819269-11819454 | Arabidopsis thaliana |
AT4G22410:CDS:3 | 3 | Chr4: 11819530-11819532 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G22410:exon:3 | 260 | Chr4: 11819876-11820135 | Arabidopsis thaliana |
AT4G22410:exon:10 | 101 | Chr4: 11818033-11818133 | Arabidopsis thaliana |
AT4G22410:exon:9 | 172 | Chr4: 11818227-11818398 | Arabidopsis thaliana |
AT4G22410:exon:8 | 138 | Chr4: 11818776-11818913 | Arabidopsis thaliana |
AT4G22410:exon:7 | 168 | Chr4: 11819009-11819176 | Arabidopsis thaliana |
AT4G22410:exon:6 | 186 | Chr4: 11819269-11819454 | Arabidopsis thaliana |
AT4G22410:exon:5 | 85 | Chr4: 11819530-11819614 | Arabidopsis thaliana |
AT4G22410:exon:4 | 245 | Chr4: 11819876-11820120 | Arabidopsis thaliana |
AT4G22410:exon:2 | 164 | Chr4: 11825828-11825991 | Arabidopsis thaliana |
AT4G22410:exon:1 | 53 | Chr4: 11826091-11826143 | Arabidopsis thaliana |
AT4G22415:exon:1 | 4860 | Chr4: 11820325-11825184 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G22410:five_prime_UTR:4 | 82 | Chr4: 11819533-11819614 | Arabidopsis thaliana |
AT4G22410:five_prime_UTR:3 | 245 | Chr4: 11819876-11820120 | Arabidopsis thaliana |
AT4G22410:five_prime_UTR:2 | 164 | Chr4: 11825828-11825991 | Arabidopsis thaliana |
AT4G22410:five_prime_UTR:1 | 53 | Chr4: 11826091-11826143 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G22410.1 | 1110 | Chr4: 11818033-11820135 |
AT4G22410.2 | 1312 | Chr4: 11818033-11826143 |
AT4G22415.1 | 4860 | Chr4: 11820325-11825184 |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE54700 | 2820 | Chr4: 11820547-11823366 | Arabidopsis thaliana |
AT4TE54705 | 23 | Chr4: 11823367-11823389 | Arabidopsis thaliana |
AT4TE54715 | 108 | Chr4: 11825591-11825698 | Arabidopsis thaliana |
Transposable Element Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT4G22415 | locus:1006230328 | AT4G22415 | 4860 | Chr4: 11820325-11825184 | A. thaliana | transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.8e-181 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10) | NULL | transposable element gene |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE54700:transposon_fragment:1 | 2820 | Chr4: 11820547-11823366 | Arabidopsis thaliana |
AT4TE54705:transposon_fragment:1 | 23 | Chr4: 11823367-11823389 | Arabidopsis thaliana |
AT4TE54715:transposon_fragment:1 | 108 | Chr4: 11825591-11825698 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
cysteine-type deubiquitinase activity | ECO |
biological process | |
protein deubiquitination | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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