External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G20340:CDS:1 | 56 | Chr4: 10985011-10985066 | Arabidopsis thaliana |
AT4G20340:CDS:2 | 120 | Chr4: 10985185-10985304 | Arabidopsis thaliana |
AT4G20340:CDS:4 | 121 | Chr4: 10985425-10985545 | Arabidopsis thaliana |
AT4G20340:CDS:5 | 114 | Chr4: 10985725-10985838 | Arabidopsis thaliana |
AT4G20340:CDS:6 | 110 | Chr4: 10985963-10986072 | Arabidopsis thaliana |
AT4G20340:CDS:7 | 184 | Chr4: 10986165-10986348 | Arabidopsis thaliana |
AT4G20340:CDS:8 | 195 | Chr4: 10986580-10986774 | Arabidopsis thaliana |
AT4G20340:CDS:9 | 222 | Chr4: 10986886-10987107 | Arabidopsis thaliana |
AT4G20340:CDS:10 | 205 | Chr4: 10987215-10987419 | Arabidopsis thaliana |
AT4G20340:CDS:11 | 101 | Chr4: 10987648-10987748 | Arabidopsis thaliana |
AT4G20340:CDS:1.1 | 56 | Chr4: 10985011-10985066 | Arabidopsis thaliana |
AT4G20340:CDS:2.1 | 120 | Chr4: 10985185-10985304 | Arabidopsis thaliana |
AT4G20340:CDS:4.1 | 121 | Chr4: 10985425-10985545 | Arabidopsis thaliana |
AT4G20340:CDS:5.1 | 114 | Chr4: 10985725-10985838 | Arabidopsis thaliana |
AT4G20340:CDS:6.1 | 110 | Chr4: 10985963-10986072 | Arabidopsis thaliana |
AT4G20340:CDS:7.1 | 184 | Chr4: 10986165-10986348 | Arabidopsis thaliana |
AT4G20340:CDS:8.1 | 195 | Chr4: 10986580-10986774 | Arabidopsis thaliana |
AT4G20340:CDS:9.1 | 222 | Chr4: 10986886-10987107 | Arabidopsis thaliana |
AT4G20340:CDS:10.1 | 205 | Chr4: 10987215-10987419 | Arabidopsis thaliana |
AT4G20340:CDS:11.1 | 101 | Chr4: 10987648-10987748 | Arabidopsis thaliana |
AT4G20340:CDS:3 | 132 | Chr4: 10985414-10985545 | Arabidopsis thaliana |
AT4G20340:CDS:5.2 | 114 | Chr4: 10985725-10985838 | Arabidopsis thaliana |
AT4G20340:CDS:6.2 | 110 | Chr4: 10985963-10986072 | Arabidopsis thaliana |
AT4G20340:CDS:7.2 | 184 | Chr4: 10986165-10986348 | Arabidopsis thaliana |
AT4G20340:CDS:8.2 | 195 | Chr4: 10986580-10986774 | Arabidopsis thaliana |
AT4G20340:CDS:9.2 | 222 | Chr4: 10986886-10987107 | Arabidopsis thaliana |
AT4G20340:CDS:10.2 | 205 | Chr4: 10987215-10987419 | Arabidopsis thaliana |
AT4G20340:CDS:11.2 | 101 | Chr4: 10987648-10987748 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G20340:exon:1 | 151 | Chr4: 10984618-10984768 | Arabidopsis thaliana |
AT4G20340:exon:3 | 113 | Chr4: 10984954-10985066 | Arabidopsis thaliana |
AT4G20340:exon:15 | 361 | Chr4: 10987648-10988008 | Arabidopsis thaliana |
AT4G20340:exon:2 | 424 | Chr4: 10984643-10985066 | Arabidopsis thaliana |
AT4G20340:exon:4 | 120 | Chr4: 10985185-10985304 | Arabidopsis thaliana |
AT4G20340:exon:6 | 121 | Chr4: 10985425-10985545 | Arabidopsis thaliana |
AT4G20340:exon:14 | 300 | Chr4: 10987648-10987947 | Arabidopsis thaliana |
AT4G20340:exon:5 | 154 | Chr4: 10985392-10985545 | Arabidopsis thaliana |
AT4G20340:exon:7 | 114 | Chr4: 10985725-10985838 | Arabidopsis thaliana |
AT4G20340:exon:8 | 110 | Chr4: 10985963-10986072 | Arabidopsis thaliana |
AT4G20340:exon:9 | 184 | Chr4: 10986165-10986348 | Arabidopsis thaliana |
AT4G20340:exon:10 | 195 | Chr4: 10986580-10986774 | Arabidopsis thaliana |
AT4G20340:exon:11 | 222 | Chr4: 10986886-10987107 | Arabidopsis thaliana |
AT4G20340:exon:12 | 205 | Chr4: 10987215-10987419 | Arabidopsis thaliana |
AT4G20340:exon:13 | 215 | Chr4: 10987648-10987862 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G20340:five_prime_UTR:1 | 151 | Chr4: 10984618-10984768 | Arabidopsis thaliana |
AT4G20340:five_prime_UTR:3 | 57 | Chr4: 10984954-10985010 | Arabidopsis thaliana |
AT4G20340:five_prime_UTR:2 | 368 | Chr4: 10984643-10985010 | Arabidopsis thaliana |
AT4G20340:five_prime_UTR:4 | 22 | Chr4: 10985392-10985413 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G20340.1 | 1896 | Chr4: 10984618-10988008 |
AT4G20340.2 | 1995 | Chr4: 10984643-10987947 |
AT4G20340.3 | 1399 | Chr4: 10985392-10987862 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G20340:three_prime_UTR:3 | 260 | Chr4: 10987749-10988008 | Arabidopsis thaliana |
AT4G20340:three_prime_UTR:2 | 199 | Chr4: 10987749-10987947 | Arabidopsis thaliana |
AT4G20340:three_prime_UTR:1 | 114 | Chr4: 10987749-10987862 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
A0A1P8B8Y2_ARATH F4JUV3_ARATH | similarity | Belongs to the TFIIE alpha subunit family. |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
transcription initiation at RNA polymerase II promoter | ECO |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...