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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G19400:CDS:5 | 85 | Chr4: 10581037-10581121 | Arabidopsis thaliana |
AT4G19400:CDS:4 | 115 | Chr4: 10581204-10581318 | Arabidopsis thaliana |
AT4G19400:CDS:3 | 110 | Chr4: 10581401-10581510 | Arabidopsis thaliana |
AT4G19400:CDS:2 | 70 | Chr4: 10581639-10581708 | Arabidopsis thaliana |
AT4G19400:CDS:1 | 67 | Chr4: 10581843-10581909 | Arabidopsis thaliana |
AT4G19410:CDS:18 | 85 | Chr4: 10581037-10581121 | Arabidopsis thaliana |
AT4G19410:CDS:17 | 115 | Chr4: 10581204-10581318 | Arabidopsis thaliana |
AT4G19410:CDS:16 | 110 | Chr4: 10581401-10581510 | Arabidopsis thaliana |
AT4G19410:CDS:15 | 70 | Chr4: 10581639-10581708 | Arabidopsis thaliana |
AT4G19410:CDS:14 | 72 | Chr4: 10581843-10581914 | Arabidopsis thaliana |
AT4G19410:CDS:12 | 40 | Chr4: 10582262-10582301 | Arabidopsis thaliana |
AT4G19410:CDS:11 | 146 | Chr4: 10582380-10582525 | Arabidopsis thaliana |
AT4G19410:CDS:10 | 106 | Chr4: 10582628-10582733 | Arabidopsis thaliana |
AT4G19410:CDS:9 | 78 | Chr4: 10582836-10582913 | Arabidopsis thaliana |
AT4G19410:CDS:8 | 54 | Chr4: 10583013-10583066 | Arabidopsis thaliana |
AT4G19410:CDS:7 | 61 | Chr4: 10583161-10583221 | Arabidopsis thaliana |
AT4G19410:CDS:6 | 125 | Chr4: 10583391-10583515 | Arabidopsis thaliana |
AT4G19410:CDS:5 | 87 | Chr4: 10583601-10583687 | Arabidopsis thaliana |
AT4G19410:CDS:4 | 80 | Chr4: 10583825-10583904 | Arabidopsis thaliana |
AT4G19410:CDS:3 | 130 | Chr4: 10584027-10584156 | Arabidopsis thaliana |
AT4G19410:CDS:2 | 83 | Chr4: 10584450-10584532 | Arabidopsis thaliana |
AT4G19410:CDS:1 | 112 | Chr4: 10584655-10584766 | Arabidopsis thaliana |
AT4G19410:CDS:13 | 114 | Chr4: 10582188-10582301 | Arabidopsis thaliana |
AT4G19410:CDS:11.1 | 146 | Chr4: 10582380-10582525 | Arabidopsis thaliana |
AT4G19410:CDS:10.1 | 106 | Chr4: 10582628-10582733 | Arabidopsis thaliana |
AT4G19410:CDS:9.1 | 78 | Chr4: 10582836-10582913 | Arabidopsis thaliana |
AT4G19410:CDS:8.1 | 54 | Chr4: 10583013-10583066 | Arabidopsis thaliana |
AT4G19410:CDS:7.1 | 61 | Chr4: 10583161-10583221 | Arabidopsis thaliana |
AT4G19410:CDS:6.1 | 125 | Chr4: 10583391-10583515 | Arabidopsis thaliana |
AT4G19410:CDS:5.1 | 87 | Chr4: 10583601-10583687 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G19400:exon:5 | 295 | Chr4: 10580827-10581121 | Arabidopsis thaliana |
AT4G19400:exon:4 | 115 | Chr4: 10581204-10581318 | Arabidopsis thaliana |
AT4G19400:exon:3 | 110 | Chr4: 10581401-10581510 | Arabidopsis thaliana |
AT4G19400:exon:2 | 70 | Chr4: 10581639-10581708 | Arabidopsis thaliana |
AT4G19400:exon:1 | 147 | Chr4: 10581843-10581989 | Arabidopsis thaliana |
AT4G19410:exon:20 | 229 | Chr4: 10580893-10581121 | Arabidopsis thaliana |
AT4G19410:exon:19 | 115 | Chr4: 10581204-10581318 | Arabidopsis thaliana |
AT4G19410:exon:18 | 110 | Chr4: 10581401-10581510 | Arabidopsis thaliana |
AT4G19410:exon:17 | 70 | Chr4: 10581639-10581708 | Arabidopsis thaliana |
AT4G19410:exon:16 | 72 | Chr4: 10581843-10581914 | Arabidopsis thaliana |
AT4G19410:exon:14 | 40 | Chr4: 10582262-10582301 | Arabidopsis thaliana |
AT4G19410:exon:1 | 234 | Chr4: 10585628-10585861 | Arabidopsis thaliana |
AT4G19410:exon:15 | 281 | Chr4: 10582021-10582301 | Arabidopsis thaliana |
AT4G19410:exon:13 | 146 | Chr4: 10582380-10582525 | Arabidopsis thaliana |
AT4G19410:exon:12 | 106 | Chr4: 10582628-10582733 | Arabidopsis thaliana |
AT4G19410:exon:11 | 78 | Chr4: 10582836-10582913 | Arabidopsis thaliana |
AT4G19410:exon:10 | 54 | Chr4: 10583013-10583066 | Arabidopsis thaliana |
AT4G19410:exon:9 | 61 | Chr4: 10583161-10583221 | Arabidopsis thaliana |
AT4G19410:exon:8 | 125 | Chr4: 10583391-10583515 | Arabidopsis thaliana |
AT4G19410:exon:7 | 87 | Chr4: 10583601-10583687 | Arabidopsis thaliana |
AT4G19410:exon:6 | 80 | Chr4: 10583825-10583904 | Arabidopsis thaliana |
AT4G19410:exon:5 | 130 | Chr4: 10584027-10584156 | Arabidopsis thaliana |
AT4G19410:exon:4 | 83 | Chr4: 10584450-10584532 | Arabidopsis thaliana |
AT4G19410:exon:3 | 113 | Chr4: 10584655-10584767 | Arabidopsis thaliana |
AT4G19410:exon:2 | 131 | Chr4: 10585628-10585758 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G19400:five_prime_UTR:1 | 80 | Chr4: 10581910-10581989 | Arabidopsis thaliana |
AT4G19410:five_prime_UTR:1 | 234 | Chr4: 10585628-10585861 | Arabidopsis thaliana |
AT4G19410:five_prime_UTR:3 | 1 | Chr4: 10584767-10584767 | Arabidopsis thaliana |
AT4G19410:five_prime_UTR:2 | 131 | Chr4: 10585628-10585758 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT4G19400 | locus:2140421 | AT4G19400 | 1163 | Chr4: 10580827-10581989 | A. thaliana | Profilin family protein;(source:Araport11) | NULL | Profilin family protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G19400.1 | 737 | Chr4: 10580827-10581989 |
AT4G19410.2 | 1933 | Chr4: 10580893-10585861 |
AT4G19410.1 | 1475 | Chr4: 10582021-10585758 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G19400:three_prime_UTR:1 | 210 | Chr4: 10580827-10581036 | Arabidopsis thaliana |
AT4G19410:three_prime_UTR:2 | 144 | Chr4: 10580893-10581036 | Arabidopsis thaliana |
AT4G19410:three_prime_UTR:1 | 167 | Chr4: 10582021-10582187 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
F4JT64_ARATH PAE7_ARATH | function | Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties. |
F4JT64_ARATH PAE7_ARATH | similarity | Belongs to the pectinacetylesterase family. |
Function
Gene Ontology
cellular component | |
---|---|
plasmodesma | ECO |
plant-type cell wall | ECO |
extracellular region | ECO |
molecular function | |
hydrolase activity | ECO |
biological process | |
cell wall organization | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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