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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G18740:CDS:6 | 293 | Chr4: 10303543-10303835 | Arabidopsis thaliana |
AT4G18740:CDS:4 | 354 | Chr4: 10303915-10304268 | Arabidopsis thaliana |
AT4G18740:CDS:1 | 91 | Chr4: 10304389-10304479 | Arabidopsis thaliana |
AT4G18740:CDS:7 | 89 | Chr4: 10303543-10303631 | Arabidopsis thaliana |
AT4G18740:CDS:5 | 111 | Chr4: 10303725-10303835 | Arabidopsis thaliana |
AT4G18740:CDS:4.1 | 354 | Chr4: 10303915-10304268 | Arabidopsis thaliana |
AT4G18740:CDS:1.1 | 91 | Chr4: 10304389-10304479 | Arabidopsis thaliana |
AT4G18740:CDS:7.1 | 89 | Chr4: 10303543-10303631 | Arabidopsis thaliana |
AT4G18740:CDS:5.1 | 111 | Chr4: 10303725-10303835 | Arabidopsis thaliana |
AT4G18740:CDS:3 | 361 | Chr4: 10303915-10304275 | Arabidopsis thaliana |
AT4G18740:CDS:2 | 9 | Chr4: 10304389-10304397 | Arabidopsis thaliana |
AT4G18740:CDS:6.1 | 293 | Chr4: 10303543-10303835 | Arabidopsis thaliana |
AT4G18740:CDS:3.1 | 361 | Chr4: 10303915-10304275 | Arabidopsis thaliana |
AT4G18740:CDS:2.1 | 9 | Chr4: 10304389-10304397 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G18730:exon:5 | 425 | Chr4: 10303008-10303432 | Arabidopsis thaliana |
AT4G18740:exon:8 | 493 | Chr4: 10303343-10303835 | Arabidopsis thaliana |
AT4G18740:exon:9 | 289 | Chr4: 10303343-10303631 | Arabidopsis thaliana |
AT4G18740:exon:4 | 354 | Chr4: 10303915-10304268 | Arabidopsis thaliana |
AT4G18740:exon:1 | 236 | Chr4: 10304389-10304624 | Arabidopsis thaliana |
AT4G18740:exon:7 | 240 | Chr4: 10303392-10303631 | Arabidopsis thaliana |
AT4G18740:exon:5 | 111 | Chr4: 10303725-10303835 | Arabidopsis thaliana |
AT4G18740:exon:6 | 444 | Chr4: 10303392-10303835 | Arabidopsis thaliana |
AT4G18740:exon:3 | 361 | Chr4: 10303915-10304275 | Arabidopsis thaliana |
AT4G18740:exon:2 | 224 | Chr4: 10304389-10304612 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G18740:five_prime_UTR:1 | 145 | Chr4: 10304480-10304624 | Arabidopsis thaliana |
AT4G18740:five_prime_UTR:2 | 215 | Chr4: 10304398-10304612 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT4G18730 | locus:2124112 | RPL16B | ribosomal protein L16B | 1270 | Chr4: 10302163-10303432 | A. thaliana | ribosomal protein L16B;(source:Araport11) | encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root and shoot apical meristems and in lateral root primordia. Expression in lateral root primordia is induced by auxin. | ribosomal protein L16B | RPL16B, uL5x |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G18730.1 | 850 | Chr4: 10302163-10303432 |
AT4G18740.1 | 1083 | Chr4: 10303343-10304624 |
AT4G18740.2 | 990 | Chr4: 10303343-10304624 |
AT4G18740.3 | 936 | Chr4: 10303392-10304612 |
AT4G18740.4 | 1029 | Chr4: 10303392-10304612 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G18730:three_prime_UTR:1 | 226 | Chr4: 10303207-10303432 | Arabidopsis thaliana |
AT4G18740:three_prime_UTR:2 | 200 | Chr4: 10303343-10303542 | Arabidopsis thaliana |
AT4G18740:three_prime_UTR:1 | 151 | Chr4: 10303392-10303542 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
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No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
DNA-templated transcription termination | ECO |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...