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Gene : AT4G18520 A. thaliana

DB identifier  ? AT4G18520 Secondary Identifier  ? locus:2124603
Brief Description  Pentatricopeptide repeat (PPR) superfamily protein
TAIR Computational Description  Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
TAIR Curator Summary  Encodes a PPR (pentatricopeptide repeat) protein PDM1/SEL1. Involved in RNA editing and splicing of plastid genes.
TAIR Short Description  Pentatricopeptide repeat (PPR) superfamily protein
TAIR Aliases  PDM1, SEL1

2 Gene Rifs

1 Organism

9 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2119  
Location: Chr4:10215096-10217214 reverse strand

Gene models - AT4G18520 AT4G18520

? Gene models

Transcripts: 1  Exons: 1 

Overlapping Features

? Genome features that overlap coordinates of this Gene

2 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
PP319_ARATH function Required for proper chloroplast development (PubMed:24144791, Ref.7). Involved in the regulation of plastid gene expression probably through regulation of plastid-encoded polymerase (PEP) dependent chloroplast transcription (PubMed:24144791). Required for RNA editing of several chloroplastic transcripts, especially accD transcripts (PubMed:24144791, PubMed:26123918). Required for processing of the chloroplastic rpoA pre-mRNA (Ref.6, Ref.7). Required for the monocistronic rpoA transcript processing from the rpl23-rpl2-rps19-rpl22-rps3-rpl16-rpl14-rps8-rpl36-rps11-rpoA polycistron. Binds the intergenic sequence of rps11-rpoA for rpoA monocistronic RNA cleavage (Ref.7).
PP319_ARATH similarity Belongs to the PPR family. PCMP-A subfamily.
PP319_ARATH tissue specificity Expressed specifically in aerial greening tissues, such as cotyledons, rosette leaves, cauline leaves, stems, sepals, stamens, carpels and siliques.

1 Proteins

Function

Gene Ontology

cellular component
chloroplast  ? ECO  
molecular function
mRNA binding  ? ECO  
biological process
RNA splicing  ? ECO  
chloroplast RNA modification  ? ECO  
mRNA processing  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

8 Data Sets