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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G17610:CDS:37 | 162 | Chr4: 9805652-9805813 | Arabidopsis thaliana |
AT4G17610:CDS:36 | 157 | Chr4: 9805912-9806068 | Arabidopsis thaliana |
AT4G17610:CDS:35 | 71 | Chr4: 9806151-9806221 | Arabidopsis thaliana |
AT4G17610:CDS:34 | 152 | Chr4: 9806348-9806499 | Arabidopsis thaliana |
AT4G17610:CDS:33 | 241 | Chr4: 9806567-9806807 | Arabidopsis thaliana |
AT4G17610:CDS:32 | 60 | Chr4: 9806884-9806943 | Arabidopsis thaliana |
AT4G17610:CDS:31 | 88 | Chr4: 9807162-9807249 | Arabidopsis thaliana |
AT4G17610:CDS:30 | 131 | Chr4: 9807382-9807512 | Arabidopsis thaliana |
AT4G17610:CDS:29 | 147 | Chr4: 9807602-9807748 | Arabidopsis thaliana |
AT4G17610:CDS:28 | 51 | Chr4: 9807834-9807884 | Arabidopsis thaliana |
AT4G17610:CDS:27 | 75 | Chr4: 9808020-9808094 | Arabidopsis thaliana |
AT4G17610:CDS:25 | 108 | Chr4: 9808282-9808389 | Arabidopsis thaliana |
AT4G17610:CDS:24 | 48 | Chr4: 9808510-9808557 | Arabidopsis thaliana |
AT4G17610:CDS:23 | 162 | Chr4: 9808651-9808812 | Arabidopsis thaliana |
AT4G17610:CDS:22 | 101 | Chr4: 9808904-9809004 | Arabidopsis thaliana |
AT4G17610:CDS:21 | 148 | Chr4: 9809090-9809237 | Arabidopsis thaliana |
AT4G17610:CDS:20 | 162 | Chr4: 9809321-9809482 | Arabidopsis thaliana |
AT4G17610:CDS:19 | 118 | Chr4: 9809581-9809698 | Arabidopsis thaliana |
AT4G17610:CDS:18 | 125 | Chr4: 9809795-9809919 | Arabidopsis thaliana |
AT4G17610:CDS:17 | 240 | Chr4: 9810060-9810299 | Arabidopsis thaliana |
AT4G17610:CDS:16 | 141 | Chr4: 9810422-9810562 | Arabidopsis thaliana |
AT4G17610:CDS:15 | 156 | Chr4: 9810706-9810861 | Arabidopsis thaliana |
AT4G17610:CDS:14 | 249 | Chr4: 9810958-9811206 | Arabidopsis thaliana |
AT4G17610:CDS:13 | 245 | Chr4: 9811288-9811532 | Arabidopsis thaliana |
AT4G17610:CDS:12 | 114 | Chr4: 9811610-9811723 | Arabidopsis thaliana |
AT4G17610:CDS:11 | 284 | Chr4: 9811847-9812130 | Arabidopsis thaliana |
AT4G17610:CDS:10 | 82 | Chr4: 9812290-9812371 | Arabidopsis thaliana |
AT4G17610:CDS:9 | 138 | Chr4: 9812505-9812642 | Arabidopsis thaliana |
AT4G17610:CDS:8 | 163 | Chr4: 9812874-9813036 | Arabidopsis thaliana |
AT4G17610:CDS:7 | 300 | Chr4: 9813123-9813422 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G17600:exon:3 | 953 | Chr4: 9804458-9805410 | Arabidopsis thaliana |
AT4G17610:exon:41 | 860 | Chr4: 9804954-9805813 | Arabidopsis thaliana |
AT4G17610:exon:1 | 308 | Chr4: 9814755-9815062 | Arabidopsis thaliana |
AT4G17610:exon:40 | 337 | Chr4: 9805477-9805813 | Arabidopsis thaliana |
AT4G17610:exon:27 | 108 | Chr4: 9808282-9808389 | Arabidopsis thaliana |
AT4G17610:exon:5 | 110 | Chr4: 9814382-9814491 | Arabidopsis thaliana |
AT4G17610:exon:2 | 289 | Chr4: 9814755-9815043 | Arabidopsis thaliana |
AT4G17610:exon:39 | 319 | Chr4: 9805495-9805813 | Arabidopsis thaliana |
AT4G17610:exon:38 | 157 | Chr4: 9805912-9806068 | Arabidopsis thaliana |
AT4G17610:exon:37 | 71 | Chr4: 9806151-9806221 | Arabidopsis thaliana |
AT4G17610:exon:36 | 152 | Chr4: 9806348-9806499 | Arabidopsis thaliana |
AT4G17610:exon:35 | 241 | Chr4: 9806567-9806807 | Arabidopsis thaliana |
AT4G17610:exon:34 | 60 | Chr4: 9806884-9806943 | Arabidopsis thaliana |
AT4G17610:exon:33 | 88 | Chr4: 9807162-9807249 | Arabidopsis thaliana |
AT4G17610:exon:32 | 131 | Chr4: 9807382-9807512 | Arabidopsis thaliana |
AT4G17610:exon:31 | 147 | Chr4: 9807602-9807748 | Arabidopsis thaliana |
AT4G17610:exon:30 | 51 | Chr4: 9807834-9807884 | Arabidopsis thaliana |
AT4G17610:exon:29 | 75 | Chr4: 9808020-9808094 | Arabidopsis thaliana |
AT4G17610:exon:28 | 132 | Chr4: 9808258-9808389 | Arabidopsis thaliana |
AT4G17610:exon:26 | 48 | Chr4: 9808510-9808557 | Arabidopsis thaliana |
AT4G17610:exon:25 | 162 | Chr4: 9808651-9808812 | Arabidopsis thaliana |
AT4G17610:exon:24 | 101 | Chr4: 9808904-9809004 | Arabidopsis thaliana |
AT4G17610:exon:23 | 148 | Chr4: 9809090-9809237 | Arabidopsis thaliana |
AT4G17610:exon:22 | 162 | Chr4: 9809321-9809482 | Arabidopsis thaliana |
AT4G17610:exon:21 | 118 | Chr4: 9809581-9809698 | Arabidopsis thaliana |
AT4G17610:exon:20 | 125 | Chr4: 9809795-9809919 | Arabidopsis thaliana |
AT4G17610:exon:19 | 240 | Chr4: 9810060-9810299 | Arabidopsis thaliana |
AT4G17610:exon:18 | 141 | Chr4: 9810422-9810562 | Arabidopsis thaliana |
AT4G17610:exon:17 | 156 | Chr4: 9810706-9810861 | Arabidopsis thaliana |
AT4G17610:exon:16 | 249 | Chr4: 9810958-9811206 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G17610:five_prime_UTR:1 | 152 | Chr4: 9814911-9815062 | Arabidopsis thaliana |
AT4G17610:five_prime_UTR:2 | 133 | Chr4: 9814911-9815043 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT4G17600 | locus:2129296 | LIL3:1 | 1787 | Chr4: 9803624-9805410 | A. thaliana | Chlorophyll A-B binding family protein;(source:Araport11) | Encodes Lil3:1 (light-harvesting-like) protein. Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus. A generic LHC motif is present in Lil3:1. The mRNA is cell-to-cell mobile. | Chlorophyll A-B binding family protein | LIL3:1 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G17600.1 | 1620 | Chr4: 9803624-9805410 |
AT4G17610.2 | 6313 | Chr4: 9804954-9815062 |
AT4G17610.3 | 5774 | Chr4: 9805477-9815043 |
AT4G17610.1 | 5644 | Chr4: 9805495-9814910 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G17600:three_prime_UTR:1 | 696 | Chr4: 9804715-9805410 | Arabidopsis thaliana |
AT4G17610:three_prime_UTR:3 | 698 | Chr4: 9804954-9805651 | Arabidopsis thaliana |
AT4G17610:three_prime_UTR:2 | 175 | Chr4: 9805477-9805651 | Arabidopsis thaliana |
AT4G17610:three_prime_UTR:1 | 157 | Chr4: 9805495-9805651 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
tRNA (guanine) methyltransferase activity | ECO |
RNA binding | ECO |
biological process | |
tRNA methylation | ECO |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...