External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
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- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 41, Exons: 21, Five Prime UTRs: 3, mRNAs: 17, Three Prime UTRs: 20, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G17310:CDS:3 | 151 | Chr4: 9686466-9686616 | Arabidopsis thaliana |
AT4G17310:CDS:1 | 149 | Chr4: 9686700-9686848 | Arabidopsis thaliana |
AT4G17310:CDS:3.1 | 151 | Chr4: 9686466-9686616 | Arabidopsis thaliana |
AT4G17310:CDS:1.1 | 149 | Chr4: 9686700-9686848 | Arabidopsis thaliana |
AT4G17310:CDS:4 | 8 | Chr4: 9686017-9686024 | Arabidopsis thaliana |
AT4G17310:CDS:2 | 119 | Chr4: 9686498-9686616 | Arabidopsis thaliana |
AT4G17310:CDS:1.2 | 149 | Chr4: 9686700-9686848 | Arabidopsis thaliana |
AT4G17310:CDS:3.2 | 151 | Chr4: 9686466-9686616 | Arabidopsis thaliana |
AT4G17310:CDS:1.3 | 149 | Chr4: 9686700-9686848 | Arabidopsis thaliana |
AT4G17310:CDS:4.1 | 8 | Chr4: 9686017-9686024 | Arabidopsis thaliana |
AT4G17310:CDS:2.1 | 119 | Chr4: 9686498-9686616 | Arabidopsis thaliana |
AT4G17310:CDS:1.4 | 149 | Chr4: 9686700-9686848 | Arabidopsis thaliana |
AT4G17310:CDS:3.3 | 151 | Chr4: 9686466-9686616 | Arabidopsis thaliana |
AT4G17310:CDS:1.5 | 149 | Chr4: 9686700-9686848 | Arabidopsis thaliana |
AT4G17310:CDS:6 | 26 | Chr4: 9685429-9685454 | Arabidopsis thaliana |
AT4G17310:CDS:2.2 | 119 | Chr4: 9686498-9686616 | Arabidopsis thaliana |
AT4G17310:CDS:1.6 | 149 | Chr4: 9686700-9686848 | Arabidopsis thaliana |
AT4G17310:CDS:4.2 | 8 | Chr4: 9686017-9686024 | Arabidopsis thaliana |
AT4G17310:CDS:2.3 | 119 | Chr4: 9686498-9686616 | Arabidopsis thaliana |
AT4G17310:CDS:1.7 | 149 | Chr4: 9686700-9686848 | Arabidopsis thaliana |
AT4G17310:CDS:3.4 | 151 | Chr4: 9686466-9686616 | Arabidopsis thaliana |
AT4G17310:CDS:1.8 | 149 | Chr4: 9686700-9686848 | Arabidopsis thaliana |
AT4G17310:CDS:3.5 | 151 | Chr4: 9686466-9686616 | Arabidopsis thaliana |
AT4G17310:CDS:1.9 | 149 | Chr4: 9686700-9686848 | Arabidopsis thaliana |
AT4G17310:CDS:3.6 | 151 | Chr4: 9686466-9686616 | Arabidopsis thaliana |
AT4G17310:CDS:1.10 | 149 | Chr4: 9686700-9686848 | Arabidopsis thaliana |
AT4G17310:CDS:3.7 | 151 | Chr4: 9686466-9686616 | Arabidopsis thaliana |
AT4G17310:CDS:1.11 | 149 | Chr4: 9686700-9686848 | Arabidopsis thaliana |
AT4G17310:CDS:3.8 | 151 | Chr4: 9686466-9686616 | Arabidopsis thaliana |
AT4G17310:CDS:1.12 | 149 | Chr4: 9686700-9686848 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G17310:exon:20 | 1447 | Chr4: 9685170-9686616 | Arabidopsis thaliana |
AT4G17310:exon:21 | 285 | Chr4: 9685170-9685454 | Arabidopsis thaliana |
AT4G17310:exon:9 | 951 | Chr4: 9685666-9686616 | Arabidopsis thaliana |
AT4G17310:exon:11 | 45 | Chr4: 9685666-9685710 | Arabidopsis thaliana |
AT4G17310:exon:19 | 278 | Chr4: 9685177-9685454 | Arabidopsis thaliana |
AT4G17310:exon:2 | 261 | Chr4: 9686700-9686960 | Arabidopsis thaliana |
AT4G17310:exon:18 | 277 | Chr4: 9685178-9685454 | Arabidopsis thaliana |
AT4G17310:exon:15 | 839 | Chr4: 9685186-9686024 | Arabidopsis thaliana |
AT4G17310:exon:17 | 269 | Chr4: 9685186-9685454 | Arabidopsis thaliana |
AT4G17310:exon:16 | 525 | Chr4: 9685186-9685710 | Arabidopsis thaliana |
AT4G17310:exon:8 | 122 | Chr4: 9685903-9686024 | Arabidopsis thaliana |
AT4G17310:exon:5 | 173 | Chr4: 9686444-9686616 | Arabidopsis thaliana |
AT4G17310:exon:1 | 303 | Chr4: 9686700-9687002 | Arabidopsis thaliana |
AT4G17310:exon:10 | 359 | Chr4: 9685666-9686024 | Arabidopsis thaliana |
AT4G17310:exon:14 | 254 | Chr4: 9685201-9685454 | Arabidopsis thaliana |
AT4G17310:exon:6 | 48 | Chr4: 9685977-9686024 | Arabidopsis thaliana |
AT4G17310:exon:13 | 510 | Chr4: 9685201-9685710 | Arabidopsis thaliana |
AT4G17310:exon:4 | 119 | Chr4: 9686498-9686616 | Arabidopsis thaliana |
AT4G17310:exon:12 | 318 | Chr4: 9685456-9685773 | Arabidopsis thaliana |
AT4G17310:exon:7 | 714 | Chr4: 9685903-9686616 | Arabidopsis thaliana |
AT4G17310:exon:3 | 229 | Chr4: 9686700-9686928 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G17310:five_prime_UTR:2 | 112 | Chr4: 9686849-9686960 | Arabidopsis thaliana |
AT4G17310:five_prime_UTR:1 | 154 | Chr4: 9686849-9687002 | Arabidopsis thaliana |
AT4G17310:five_prime_UTR:3 | 80 | Chr4: 9686849-9686928 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G17310.3 | 1708 | Chr4: 9685170-9686960 |
AT4G17310.4 | 1497 | Chr4: 9685170-9686960 |
AT4G17310.8 | 780 | Chr4: 9685177-9686960 |
AT4G17310.5 | 1298 | Chr4: 9685177-9686960 |
AT4G17310.7 | 825 | Chr4: 9685177-9686960 |
AT4G17310.6 | 1253 | Chr4: 9685177-9686960 |
AT4G17310.2 | 699 | Chr4: 9685178-9687002 |
AT4G17310.10 | 1261 | Chr4: 9685186-9687002 |
AT4G17310.9 | 1315 | Chr4: 9685186-9687002 |
AT4G17310.12 | 1104 | Chr4: 9685186-9687002 |
AT4G17310.1 | 745 | Chr4: 9685186-9687002 |
AT4G17310.13 | 867 | Chr4: 9685186-9687002 |
AT4G17310.11 | 1123 | Chr4: 9685186-9687002 |
AT4G17310.14 | 961 | Chr4: 9685201-9686928 |
AT4G17310.16 | 650 | Chr4: 9685201-9686928 |
AT4G17310.15 | 858 | Chr4: 9685201-9686928 |
AT4G17310.17 | 1261 | Chr4: 9685456-9686928 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G17310:three_prime_UTR:19 | 1296 | Chr4: 9685170-9686465 | Arabidopsis thaliana |
AT4G17310:three_prime_UTR:20 | 285 | Chr4: 9685170-9685454 | Arabidopsis thaliana |
AT4G17310:three_prime_UTR:6 | 800 | Chr4: 9685666-9686465 | Arabidopsis thaliana |
AT4G17310:three_prime_UTR:9 | 45 | Chr4: 9685666-9685710 | Arabidopsis thaliana |
AT4G17310:three_prime_UTR:5 | 114 | Chr4: 9685903-9686016 | Arabidopsis thaliana |
AT4G17310:three_prime_UTR:18 | 278 | Chr4: 9685177-9685454 | Arabidopsis thaliana |
AT4G17310:three_prime_UTR:17 | 251 | Chr4: 9685178-9685428 | Arabidopsis thaliana |
AT4G17310:three_prime_UTR:14 | 831 | Chr4: 9685186-9686016 | Arabidopsis thaliana |
AT4G17310:three_prime_UTR:13 | 839 | Chr4: 9685186-9686024 | Arabidopsis thaliana |
AT4G17310:three_prime_UTR:7 | 359 | Chr4: 9685666-9686024 | Arabidopsis thaliana |
AT4G17310:three_prime_UTR:16 | 269 | Chr4: 9685186-9685454 | Arabidopsis thaliana |
AT4G17310:three_prime_UTR:15 | 525 | Chr4: 9685186-9685710 | Arabidopsis thaliana |
AT4G17310:three_prime_UTR:4 | 122 | Chr4: 9685903-9686024 | Arabidopsis thaliana |
AT4G17310:three_prime_UTR:1 | 22 | Chr4: 9686444-9686465 | Arabidopsis thaliana |
AT4G17310:three_prime_UTR:8 | 351 | Chr4: 9685666-9686016 | Arabidopsis thaliana |
AT4G17310:three_prime_UTR:12 | 254 | Chr4: 9685201-9685454 | Arabidopsis thaliana |
AT4G17310:three_prime_UTR:2 | 40 | Chr4: 9685977-9686016 | Arabidopsis thaliana |
AT4G17310:three_prime_UTR:11 | 490 | Chr4: 9685201-9685690 | Arabidopsis thaliana |
AT4G17310:three_prime_UTR:10 | 318 | Chr4: 9685456-9685773 | Arabidopsis thaliana |
AT4G17310:three_prime_UTR:3 | 563 | Chr4: 9685903-9686465 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE43830 | 399 | Chr4: 9686958-9687356 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE43830:transposon_fragment:1 | 265 | Chr4: 9686958-9687222 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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