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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G17140:CDS:72 | 360 | Chr4: 9613617-9613976 | Arabidopsis thaliana |
AT4G17140:CDS:71 | 109 | Chr4: 9614155-9614263 | Arabidopsis thaliana |
AT4G17140:CDS:70 | 53 | Chr4: 9614405-9614457 | Arabidopsis thaliana |
AT4G17140:CDS:69 | 219 | Chr4: 9614759-9614977 | Arabidopsis thaliana |
AT4G17140:CDS:68 | 285 | Chr4: 9615232-9615516 | Arabidopsis thaliana |
AT4G17140:CDS:67 | 159 | Chr4: 9615607-9615765 | Arabidopsis thaliana |
AT4G17140:CDS:66 | 360 | Chr4: 9616016-9616375 | Arabidopsis thaliana |
AT4G17140:CDS:65 | 222 | Chr4: 9616450-9616671 | Arabidopsis thaliana |
AT4G17140:CDS:64 | 127 | Chr4: 9617084-9617210 | Arabidopsis thaliana |
AT4G17140:CDS:63 | 137 | Chr4: 9617333-9617469 | Arabidopsis thaliana |
AT4G17140:CDS:62 | 178 | Chr4: 9617564-9617741 | Arabidopsis thaliana |
AT4G17140:CDS:61 | 519 | Chr4: 9617842-9618360 | Arabidopsis thaliana |
AT4G17140:CDS:60 | 182 | Chr4: 9618448-9618629 | Arabidopsis thaliana |
AT4G17140:CDS:59 | 105 | Chr4: 9618793-9618897 | Arabidopsis thaliana |
AT4G17140:CDS:57 | 77 | Chr4: 9618979-9619055 | Arabidopsis thaliana |
AT4G17140:CDS:55 | 139 | Chr4: 9619154-9619292 | Arabidopsis thaliana |
AT4G17140:CDS:53 | 349 | Chr4: 9619377-9619725 | Arabidopsis thaliana |
AT4G17140:CDS:52 | 74 | Chr4: 9619814-9619887 | Arabidopsis thaliana |
AT4G17140:CDS:51 | 888 | Chr4: 9619998-9620885 | Arabidopsis thaliana |
AT4G17140:CDS:50 | 125 | Chr4: 9621056-9621180 | Arabidopsis thaliana |
AT4G17140:CDS:49 | 43 | Chr4: 9621288-9621330 | Arabidopsis thaliana |
AT4G17140:CDS:48 | 195 | Chr4: 9621722-9621916 | Arabidopsis thaliana |
AT4G17140:CDS:47 | 270 | Chr4: 9622209-9622478 | Arabidopsis thaliana |
AT4G17140:CDS:46 | 163 | Chr4: 9622608-9622770 | Arabidopsis thaliana |
AT4G17140:CDS:45 | 164 | Chr4: 9622937-9623100 | Arabidopsis thaliana |
AT4G17140:CDS:44 | 490 | Chr4: 9623174-9623663 | Arabidopsis thaliana |
AT4G17140:CDS:43 | 363 | Chr4: 9623753-9624115 | Arabidopsis thaliana |
AT4G17140:CDS:42 | 315 | Chr4: 9624505-9624819 | Arabidopsis thaliana |
AT4G17140:CDS:41 | 85 | Chr4: 9624896-9624980 | Arabidopsis thaliana |
AT4G17140:CDS:40 | 290 | Chr4: 9625061-9625350 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G17140:exon:58 | 105 | Chr4: 9618793-9618897 | Arabidopsis thaliana |
AT4G17140:exon:72 | 647 | Chr4: 9613330-9613976 | Arabidopsis thaliana |
AT4G17140:exon:57 | 109 | Chr4: 9618793-9618901 | Arabidopsis thaliana |
AT4G17140:exon:54 | 99 | Chr4: 9619194-9619292 | Arabidopsis thaliana |
AT4G17140:exon:24 | 30 | Chr4: 9630043-9630072 | Arabidopsis thaliana |
AT4G17140:exon:23 | 53 | Chr4: 9630129-9630181 | Arabidopsis thaliana |
AT4G17140:exon:21 | 25 | Chr4: 9630283-9630307 | Arabidopsis thaliana |
AT4G17140:exon:71 | 643 | Chr4: 9613334-9613976 | Arabidopsis thaliana |
AT4G17140:exon:70 | 109 | Chr4: 9614155-9614263 | Arabidopsis thaliana |
AT4G17140:exon:69 | 53 | Chr4: 9614405-9614457 | Arabidopsis thaliana |
AT4G17140:exon:68 | 219 | Chr4: 9614759-9614977 | Arabidopsis thaliana |
AT4G17140:exon:67 | 285 | Chr4: 9615232-9615516 | Arabidopsis thaliana |
AT4G17140:exon:66 | 159 | Chr4: 9615607-9615765 | Arabidopsis thaliana |
AT4G17140:exon:65 | 360 | Chr4: 9616016-9616375 | Arabidopsis thaliana |
AT4G17140:exon:64 | 222 | Chr4: 9616450-9616671 | Arabidopsis thaliana |
AT4G17140:exon:63 | 127 | Chr4: 9617084-9617210 | Arabidopsis thaliana |
AT4G17140:exon:62 | 137 | Chr4: 9617333-9617469 | Arabidopsis thaliana |
AT4G17140:exon:61 | 178 | Chr4: 9617564-9617741 | Arabidopsis thaliana |
AT4G17140:exon:60 | 519 | Chr4: 9617842-9618360 | Arabidopsis thaliana |
AT4G17140:exon:59 | 182 | Chr4: 9618448-9618629 | Arabidopsis thaliana |
AT4G17140:exon:56 | 77 | Chr4: 9618979-9619055 | Arabidopsis thaliana |
AT4G17140:exon:55 | 139 | Chr4: 9619154-9619292 | Arabidopsis thaliana |
AT4G17140:exon:53 | 349 | Chr4: 9619377-9619725 | Arabidopsis thaliana |
AT4G17140:exon:52 | 74 | Chr4: 9619814-9619887 | Arabidopsis thaliana |
AT4G17140:exon:51 | 888 | Chr4: 9619998-9620885 | Arabidopsis thaliana |
AT4G17140:exon:50 | 125 | Chr4: 9621056-9621180 | Arabidopsis thaliana |
AT4G17140:exon:49 | 43 | Chr4: 9621288-9621330 | Arabidopsis thaliana |
AT4G17140:exon:48 | 195 | Chr4: 9621722-9621916 | Arabidopsis thaliana |
AT4G17140:exon:47 | 270 | Chr4: 9622209-9622478 | Arabidopsis thaliana |
AT4G17140:exon:46 | 163 | Chr4: 9622608-9622770 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G17140:five_prime_UTR:1 | 255 | Chr4: 9636619-9636873 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G17140.2 | 13199 | Chr4: 9613330-9636873 |
AT4G17140.1 | 13193 | Chr4: 9613330-9636873 |
AT4G17140.3 | 13198 | Chr4: 9613334-9636873 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G17140:three_prime_UTR:2 | 287 | Chr4: 9613330-9613616 | Arabidopsis thaliana |
AT4G17140:three_prime_UTR:1 | 283 | Chr4: 9613334-9613616 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
F4JNE2_ARATH F4JNE3_ARATH F4JNE4_ARATH | similarity | Belongs to the VPS13 family. |
Function
Gene Ontology
cellular component | |
---|---|
plasmodesma | ECO |
plant-type vacuole | ECO |
Golgi apparatus | ECO |
cytosol | ECO |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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