External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 25, Exons: 14, Five Prime UTRs: 3, mRNAs: 3, Three Prime UTRs: 3, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G17000:CDS:11 | 226 | Chr4: 9567046-9567271 | Arabidopsis thaliana |
AT4G17000:CDS:10 | 86 | Chr4: 9567400-9567485 | Arabidopsis thaliana |
AT4G17000:CDS:8 | 126 | Chr4: 9567565-9567690 | Arabidopsis thaliana |
AT4G17000:CDS:7 | 114 | Chr4: 9567780-9567893 | Arabidopsis thaliana |
AT4G17000:CDS:6 | 79 | Chr4: 9567973-9568051 | Arabidopsis thaliana |
AT4G17000:CDS:5 | 1083 | Chr4: 9568141-9569223 | Arabidopsis thaliana |
AT4G17000:CDS:4 | 59 | Chr4: 9569335-9569393 | Arabidopsis thaliana |
AT4G17000:CDS:11.1 | 226 | Chr4: 9567046-9567271 | Arabidopsis thaliana |
AT4G17000:CDS:10.1 | 86 | Chr4: 9567400-9567485 | Arabidopsis thaliana |
AT4G17000:CDS:8.1 | 126 | Chr4: 9567565-9567690 | Arabidopsis thaliana |
AT4G17000:CDS:7.1 | 114 | Chr4: 9567780-9567893 | Arabidopsis thaliana |
AT4G17000:CDS:6.1 | 79 | Chr4: 9567973-9568051 | Arabidopsis thaliana |
AT4G17000:CDS:5.1 | 1083 | Chr4: 9568141-9569223 | Arabidopsis thaliana |
AT4G17000:CDS:3 | 62 | Chr4: 9569335-9569396 | Arabidopsis thaliana |
AT4G17000:CDS:2 | 65 | Chr4: 9569502-9569566 | Arabidopsis thaliana |
AT4G17000:CDS:1 | 145 | Chr4: 9569769-9569913 | Arabidopsis thaliana |
AT4G17000:CDS:11.2 | 226 | Chr4: 9567046-9567271 | Arabidopsis thaliana |
AT4G17000:CDS:10.2 | 86 | Chr4: 9567400-9567485 | Arabidopsis thaliana |
AT4G17000:CDS:9 | 165 | Chr4: 9567526-9567690 | Arabidopsis thaliana |
AT4G17000:CDS:7.2 | 114 | Chr4: 9567780-9567893 | Arabidopsis thaliana |
AT4G17000:CDS:6.2 | 79 | Chr4: 9567973-9568051 | Arabidopsis thaliana |
AT4G17000:CDS:5.2 | 1083 | Chr4: 9568141-9569223 | Arabidopsis thaliana |
AT4G17000:CDS:3.1 | 62 | Chr4: 9569335-9569396 | Arabidopsis thaliana |
AT4G17000:CDS:2.1 | 65 | Chr4: 9569502-9569566 | Arabidopsis thaliana |
AT4G17000:CDS:1.1 | 145 | Chr4: 9569769-9569913 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G17000:exon:14 | 395 | Chr4: 9566877-9567271 | Arabidopsis thaliana |
AT4G17000:exon:3 | 129 | Chr4: 9569502-9569630 | Arabidopsis thaliana |
AT4G17000:exon:13 | 373 | Chr4: 9566899-9567271 | Arabidopsis thaliana |
AT4G17000:exon:9 | 126 | Chr4: 9567565-9567690 | Arabidopsis thaliana |
AT4G17000:exon:1 | 315 | Chr4: 9569769-9570083 | Arabidopsis thaliana |
AT4G17000:exon:12 | 370 | Chr4: 9566902-9567271 | Arabidopsis thaliana |
AT4G17000:exon:11 | 86 | Chr4: 9567400-9567485 | Arabidopsis thaliana |
AT4G17000:exon:10 | 165 | Chr4: 9567526-9567690 | Arabidopsis thaliana |
AT4G17000:exon:8 | 114 | Chr4: 9567780-9567893 | Arabidopsis thaliana |
AT4G17000:exon:7 | 79 | Chr4: 9567973-9568051 | Arabidopsis thaliana |
AT4G17000:exon:6 | 1083 | Chr4: 9568141-9569223 | Arabidopsis thaliana |
AT4G17000:exon:5 | 62 | Chr4: 9569335-9569396 | Arabidopsis thaliana |
AT4G17000:exon:4 | 65 | Chr4: 9569502-9569566 | Arabidopsis thaliana |
AT4G17000:exon:2 | 145 | Chr4: 9569769-9569913 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G17000:five_prime_UTR:3 | 3 | Chr4: 9569394-9569396 | Arabidopsis thaliana |
AT4G17000:five_prime_UTR:2 | 129 | Chr4: 9569502-9569630 | Arabidopsis thaliana |
AT4G17000:five_prime_UTR:1 | 170 | Chr4: 9569914-9570083 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G17000.2 | 2074 | Chr4: 9566877-9569630 |
AT4G17000.3 | 2303 | Chr4: 9566899-9570083 |
AT4G17000.1 | 2169 | Chr4: 9566902-9569913 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G17000:three_prime_UTR:3 | 169 | Chr4: 9566877-9567045 | Arabidopsis thaliana |
AT4G17000:three_prime_UTR:2 | 147 | Chr4: 9566899-9567045 | Arabidopsis thaliana |
AT4G17000:three_prime_UTR:1 | 144 | Chr4: 9566902-9567045 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE43240 | 226 | Chr4: 9566735-9566960 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE43240:transposon_fragment:1 | 226 | Chr4: 9566735-9566960 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
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No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...