help  | faq  | software  | BAR
Hide Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.

Gene : AT4G16800 A. thaliana

DB identifier  ? AT4G16800 Secondary Identifier  ? locus:2129146
Brief Description  ATP-dependent caseinolytic (Clp) protease/crotonase family protein
TAIR Computational Description  ATP-dependent caseinolytic (Clp) protease/crotonase family protein;(source:Araport11)
TAIR Curator Summary  3-methylglutaconyl-CoA hydratase localized to mitochondria. Knockout displays accelerated senescence when subjected to extended dark conditions;knockout senescing leaves and knockout seeds accumulate leu, ile, and val.
TAIR Short Description  ATP-dependent caseinolytic (Clp) protease/crotonase family protein

0 Gene Rifs

1 Organism

11 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2364  
Location: Chr4:9454707-9457070 reverse strand

Gene models - AT4G16800 AT4G16800

? Gene models

Transcripts: 1  Exons: 7  Introns: 6 

Overlapping Features

? Genome features that overlap coordinates of this Gene

8 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
ECH2M_ARATH function Straight-chain enoyl-CoA thioesters from C4 up to at least C16 are processed, although with decreasing catalytic rate.
ECH2M_ARATH pathway Lipid metabolism; fatty acid beta-oxidation.
ECH2M_ARATH similarity Belongs to the enoyl-CoA hydratase/isomerase family.

1 Proteins

Function

Gene Ontology

cellular component
cytosol  ? ECO  
mitochondrion  ? ECO  
molecular function
methylglutaconyl-CoA hydratase activity  ? ECO  
enoyl-CoA hydratase activity  ? ECO  
peptidase activity  ? ECO  
biological process
proteolysis  ? ECO  
branched-chain amino acid catabolic process  ? ECO  
fatty acid beta-oxidation  ? ECO  

Interactions

Interaction Network

Show the following interaction types:
Reset view
Show in table format
Export graph

Click on a gene to get more info about it.

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

5 Data Sets