External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G16310:CDS:1 | 1250 | Chr4: 9218636-9219885 | Arabidopsis thaliana |
AT4G16310:CDS:2 | 142 | Chr4: 9220236-9220377 | Arabidopsis thaliana |
AT4G16310:CDS:3 | 2208 | Chr4: 9220541-9222748 | Arabidopsis thaliana |
AT4G16310:CDS:4 | 94 | Chr4: 9222876-9222969 | Arabidopsis thaliana |
AT4G16310:CDS:5 | 338 | Chr4: 9223126-9223463 | Arabidopsis thaliana |
AT4G16310:CDS:6 | 714 | Chr4: 9223598-9224311 | Arabidopsis thaliana |
AT4G16310:CDS:7 | 75 | Chr4: 9224410-9224484 | Arabidopsis thaliana |
AT4G16310:CDS:8 | 66 | Chr4: 9224699-9224764 | Arabidopsis thaliana |
AT4G16310:CDS:1.1 | 1250 | Chr4: 9218636-9219885 | Arabidopsis thaliana |
AT4G16310:CDS:2.1 | 142 | Chr4: 9220236-9220377 | Arabidopsis thaliana |
AT4G16310:CDS:3.1 | 2208 | Chr4: 9220541-9222748 | Arabidopsis thaliana |
AT4G16310:CDS:4.1 | 94 | Chr4: 9222876-9222969 | Arabidopsis thaliana |
AT4G16310:CDS:5.1 | 338 | Chr4: 9223126-9223463 | Arabidopsis thaliana |
AT4G16310:CDS:6.1 | 714 | Chr4: 9223598-9224311 | Arabidopsis thaliana |
AT4G16310:CDS:7.1 | 75 | Chr4: 9224410-9224484 | Arabidopsis thaliana |
AT4G16310:CDS:8.1 | 66 | Chr4: 9224699-9224764 | Arabidopsis thaliana |
AT4G16310:CDS:1.2 | 1250 | Chr4: 9218636-9219885 | Arabidopsis thaliana |
AT4G16310:CDS:2.2 | 142 | Chr4: 9220236-9220377 | Arabidopsis thaliana |
AT4G16310:CDS:3.2 | 2208 | Chr4: 9220541-9222748 | Arabidopsis thaliana |
AT4G16310:CDS:4.2 | 94 | Chr4: 9222876-9222969 | Arabidopsis thaliana |
AT4G16310:CDS:5.2 | 338 | Chr4: 9223126-9223463 | Arabidopsis thaliana |
AT4G16310:CDS:6.2 | 714 | Chr4: 9223598-9224311 | Arabidopsis thaliana |
AT4G16310:CDS:7.2 | 75 | Chr4: 9224410-9224484 | Arabidopsis thaliana |
AT4G16310:CDS:8.2 | 66 | Chr4: 9224699-9224764 | Arabidopsis thaliana |
AT4G16310:CDS:1.3 | 1250 | Chr4: 9218636-9219885 | Arabidopsis thaliana |
AT4G16310:CDS:2.3 | 142 | Chr4: 9220236-9220377 | Arabidopsis thaliana |
AT4G16310:CDS:3.3 | 2208 | Chr4: 9220541-9222748 | Arabidopsis thaliana |
AT4G16310:CDS:4.3 | 94 | Chr4: 9222876-9222969 | Arabidopsis thaliana |
AT4G16310:CDS:5.3 | 338 | Chr4: 9223126-9223463 | Arabidopsis thaliana |
AT4G16310:CDS:6.3 | 714 | Chr4: 9223598-9224311 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G16310:exon:1 | 172 | Chr4: 9217988-9218159 | Arabidopsis thaliana |
AT4G16310:exon:15 | 851 | Chr4: 9224699-9225549 | Arabidopsis thaliana |
AT4G16310:exon:16 | 122 | Chr4: 9225627-9225748 | Arabidopsis thaliana |
AT4G16310:exon:18 | 21 | Chr4: 9226260-9226280 | Arabidopsis thaliana |
AT4G16310:exon:2 | 163 | Chr4: 9217997-9218159 | Arabidopsis thaliana |
AT4G16310:exon:13 | 706 | Chr4: 9224699-9225404 | Arabidopsis thaliana |
AT4G16310:exon:3 | 115 | Chr4: 9218045-9218159 | Arabidopsis thaliana |
AT4G16310:exon:4 | 1491 | Chr4: 9218395-9219885 | Arabidopsis thaliana |
AT4G16310:exon:14 | 839 | Chr4: 9224699-9225537 | Arabidopsis thaliana |
AT4G16310:exon:17 | 318 | Chr4: 9225627-9225944 | Arabidopsis thaliana |
AT4G16310:exon:5 | 1250 | Chr4: 9218636-9219885 | Arabidopsis thaliana |
AT4G16310:exon:6 | 142 | Chr4: 9220236-9220377 | Arabidopsis thaliana |
AT4G16310:exon:7 | 2208 | Chr4: 9220541-9222748 | Arabidopsis thaliana |
AT4G16310:exon:8 | 94 | Chr4: 9222876-9222969 | Arabidopsis thaliana |
AT4G16310:exon:9 | 338 | Chr4: 9223126-9223463 | Arabidopsis thaliana |
AT4G16310:exon:10 | 714 | Chr4: 9223598-9224311 | Arabidopsis thaliana |
AT4G16310:exon:11 | 75 | Chr4: 9224410-9224484 | Arabidopsis thaliana |
AT4G16310:exon:12 | 566 | Chr4: 9224699-9225264 | Arabidopsis thaliana |
AT4G16330:exon:7 | 670 | Chr4: 9225859-9226528 | Arabidopsis thaliana |
AT4G16330:exon:6 | 407 | Chr4: 9226122-9226528 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G16310:five_prime_UTR:1 | 172 | Chr4: 9217988-9218159 | Arabidopsis thaliana |
AT4G16310:five_prime_UTR:2 | 163 | Chr4: 9217997-9218159 | Arabidopsis thaliana |
AT4G16310:five_prime_UTR:3 | 115 | Chr4: 9218045-9218159 | Arabidopsis thaliana |
AT4G16310:five_prime_UTR:4 | 241 | Chr4: 9218395-9218635 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT4G16330 | locus:2130469 | AT4G16330 | 2245 | Chr4: 9225859-9228103 | A. thaliana | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11) | NULL | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G16310.3 | 6216 | Chr4: 9217988-9226280 |
AT4G16310.2 | 6228 | Chr4: 9217988-9226280 |
AT4G16310.1 | 5931 | Chr4: 9217997-9225404 |
AT4G16310.4 | 6334 | Chr4: 9218045-9225944 |
AT4G16310.5 | 5387 | Chr4: 9218636-9225264 |
AT4G16330.1 | 2084 | Chr4: 9225859-9228103 |
AT4G16330.2 | 1310 | Chr4: 9226122-9227953 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G16310:three_prime_UTR:4 | 785 | Chr4: 9224765-9225549 | Arabidopsis thaliana |
AT4G16310:three_prime_UTR:5 | 122 | Chr4: 9225627-9225748 | Arabidopsis thaliana |
AT4G16310:three_prime_UTR:7 | 21 | Chr4: 9226260-9226280 | Arabidopsis thaliana |
AT4G16310:three_prime_UTR:2 | 640 | Chr4: 9224765-9225404 | Arabidopsis thaliana |
AT4G16310:three_prime_UTR:3 | 773 | Chr4: 9224765-9225537 | Arabidopsis thaliana |
AT4G16310:three_prime_UTR:6 | 318 | Chr4: 9225627-9225944 | Arabidopsis thaliana |
AT4G16310:three_prime_UTR:1 | 500 | Chr4: 9224765-9225264 | Arabidopsis thaliana |
AT4G16330:three_prime_UTR:2 | 439 | Chr4: 9225859-9226297 | Arabidopsis thaliana |
AT4G16330:three_prime_UTR:1 | 176 | Chr4: 9226122-9226297 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
LDL3_ARATH LDL3_ARATH-2 | function | Probable histone demethylase that reduces the levels of histone H3 'Lys-4' methylation in chromatin. |
LDL3_ARATH LDL3_ARATH-2 | similarity | Belongs to the flavin monoamine oxidase family. |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
oxidoreductase activity | ECO |
biological process | |
chromatin organization | ECO |
Interactions
Interaction Network
Show the following interaction types:
Reset view
Show in table format
Export graph
- Click on a gene to get more info about it.
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
---|
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...