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Gene : AT4G16260 A. thaliana

DB identifier  ? AT4G16260 Secondary Identifier  ? locus:2130329
Brief Description  Glycosyl hydrolase superfamily protein
TAIR Computational Description  Glycosyl hydrolase superfamily protein;(source:Araport11)
TAIR Curator Summary  Encodes a putative beta-1,3-endoglucanase that interacts with the 30C02 cyst nematode effector. May play a role in host defense.
TAIR Short Description  Glycosyl hydrolase superfamily protein

1 Gene Rifs

1 Organism

36 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 1672  
Location: Chr4:9199972-9201643 reverse strand

Gene models - AT4G16260 AT4G16260

? Gene models

Transcripts: 2  Exons: 6  Introns: 4 

Overlapping Features

? Genome features that overlap coordinates of this Gene

6 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
BGNEM_ARATH function May be involved in plant defense against cyst nematode pathogens.
A0A1P8B3U2_ARATH BGNEM_ARATH similarity Belongs to the glycosyl hydrolase 17 family.

2 Proteins

Function

Gene Ontology

cellular component
plant-type vacuole  ? ECO  
secretory vesicle  ? ECO  
extracellular region  ? ECO  
molecular function
glucan endo-1,3-beta-D-glucosidase activity  ? ECO  
biological process
carbohydrate metabolic process  ? ECO  
defense response to nematode  ? ECO  
defense response to fungus  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

6 Data Sets