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Gene : AT4G15890 A. thaliana

DB identifier  ? AT4G15890 Secondary Identifier  ? locus:2130869
Brief Description  binding protein
TAIR Computational Description  binding protein;(source:Araport11)
TAIR Curator Summary  CAP-3D is a subunit of condensin. It a target of MMD1 regulation and also involved in meiotic chromosome condensation. Mutants have reduced fertility. Required for the correct spatial relationship between centromeres and rDNA arrays.
TAIR Short Description  binding
TAIR Aliases  CAP-D3

1 Gene Rifs

1 Organism

10 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 5771  
Location: Chr4:9017256-9023026

Gene models - AT4G15890 AT4G15890

? Gene models

Transcripts: 2  Exons: 20  Introns: 18 

Overlapping Features

? Genome features that overlap coordinates of this Gene

15 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
CNDD3_ARATH developmental stage Mostly expressed at bolting, flowering and during seed formation.
CNDD3_ARATH function Regulatory subunit of the condensin-2 complex, a complex which establishes mitotic chromosome architecture and is involved in physical rigidity of the chromatid axis (By similarity). May promote the resolution of double-strand DNA catenanes (intertwines) between sister chromatids (By similarity). Required for plant vigor, fertility, chromatin condensation and sister chromatid cohesion both during mitosis and meiosis (PubMed:23929493, PubMed:27385818). Necessary to maintain normal structural integrity of the meiotic chromosomes during the two nuclear divisions of gametogenesis, especially to prevent interchromosome connections at metaphase I (PubMed:25065716). Seems also involved in crossover formation during meiotic prophase I (PubMed:25065716). Prevents centromeric and pericentromeric heterochromatin repeats association (PubMed:23929493).
CNDD3_ARATH subcellular location Observed throughout euchromatic nucleoplasm (PubMed:23929493, PubMed:27385818). Associates with the chromosomes throughout meiosis (PubMed:25065716).
CNDD3_ARATH tissue specificity Present in buds.

2 Proteins

Function

Gene Ontology

cellular component
euchromatin  ? ECO  
condensin complex  ? ECO  
nucleoplasm  ? ECO  
condensed chromosome, centromeric region  ? ECO  
molecular function
histone binding  ? ECO  
biological process
microsporogenesis  ? ECO  
chromatin organization  ? ECO  
centromere clustering  ? ECO  
cell division  ? ECO  
mitotic cell cycle  ? ECO  
mitotic chromosome condensation  ? ECO  
sister chromatid cohesion  ? ECO  
chromosome condensation  ? ECO  
meiotic chromosome condensation  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets