External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G15840:CDS:1 | 299 | Chr4: 8996963-8997261 | Arabidopsis thaliana |
AT4G15840:CDS:2 | 184 | Chr4: 8997349-8997532 | Arabidopsis thaliana |
AT4G15840:CDS:3 | 69 | Chr4: 8997616-8997684 | Arabidopsis thaliana |
AT4G15840:CDS:4 | 99 | Chr4: 8997773-8997871 | Arabidopsis thaliana |
AT4G15840:CDS:5 | 80 | Chr4: 8998154-8998233 | Arabidopsis thaliana |
AT4G15840:CDS:6 | 730 | Chr4: 8998327-8999056 | Arabidopsis thaliana |
AT4G15840:CDS:7 | 638 | Chr4: 8999256-8999893 | Arabidopsis thaliana |
AT4G15840:CDS:8 | 85 | Chr4: 9000018-9000102 | Arabidopsis thaliana |
AT4G15840:CDS:9 | 52 | Chr4: 9000209-9000260 | Arabidopsis thaliana |
AT4G15840:CDS:11 | 50 | Chr4: 9000356-9000405 | Arabidopsis thaliana |
AT4G15840:CDS:12 | 48 | Chr4: 9000501-9000548 | Arabidopsis thaliana |
AT4G15840:CDS:13 | 177 | Chr4: 9000676-9000852 | Arabidopsis thaliana |
AT4G15840:CDS:1.1 | 299 | Chr4: 8996963-8997261 | Arabidopsis thaliana |
AT4G15840:CDS:2.1 | 184 | Chr4: 8997349-8997532 | Arabidopsis thaliana |
AT4G15840:CDS:3.1 | 69 | Chr4: 8997616-8997684 | Arabidopsis thaliana |
AT4G15840:CDS:4.1 | 99 | Chr4: 8997773-8997871 | Arabidopsis thaliana |
AT4G15840:CDS:5.1 | 80 | Chr4: 8998154-8998233 | Arabidopsis thaliana |
AT4G15840:CDS:6.1 | 730 | Chr4: 8998327-8999056 | Arabidopsis thaliana |
AT4G15840:CDS:7.1 | 638 | Chr4: 8999256-8999893 | Arabidopsis thaliana |
AT4G15840:CDS:8.1 | 85 | Chr4: 9000018-9000102 | Arabidopsis thaliana |
AT4G15840:CDS:10 | 66 | Chr4: 9000209-9000274 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G15840:exon:1 | 428 | Chr4: 8996834-8997261 | Arabidopsis thaliana |
AT4G15840:exon:10 | 52 | Chr4: 9000209-9000260 | Arabidopsis thaliana |
AT4G15840:exon:12 | 50 | Chr4: 9000356-9000405 | Arabidopsis thaliana |
AT4G15840:exon:2 | 409 | Chr4: 8996853-8997261 | Arabidopsis thaliana |
AT4G15840:exon:3 | 184 | Chr4: 8997349-8997532 | Arabidopsis thaliana |
AT4G15840:exon:4 | 69 | Chr4: 8997616-8997684 | Arabidopsis thaliana |
AT4G15840:exon:5 | 99 | Chr4: 8997773-8997871 | Arabidopsis thaliana |
AT4G15840:exon:6 | 80 | Chr4: 8998154-8998233 | Arabidopsis thaliana |
AT4G15840:exon:7 | 730 | Chr4: 8998327-8999056 | Arabidopsis thaliana |
AT4G15840:exon:8 | 638 | Chr4: 8999256-8999893 | Arabidopsis thaliana |
AT4G15840:exon:9 | 85 | Chr4: 9000018-9000102 | Arabidopsis thaliana |
AT4G15840:exon:11 | 197 | Chr4: 9000209-9000405 | Arabidopsis thaliana |
AT4G15840:exon:13 | 48 | Chr4: 9000501-9000548 | Arabidopsis thaliana |
AT4G15840:exon:14 | 364 | Chr4: 9000676-9001039 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G15840:five_prime_UTR:1 | 129 | Chr4: 8996834-8996962 | Arabidopsis thaliana |
AT4G15840:five_prime_UTR:2 | 110 | Chr4: 8996853-8996962 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G15840.1 | 2827 | Chr4: 8996834-9001039 |
AT4G15840.2 | 2903 | Chr4: 8996853-9001039 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G15840:three_prime_UTR:4 | 187 | Chr4: 9000853-9001039 | Arabidopsis thaliana |
AT4G15840:three_prime_UTR:1 | 131 | Chr4: 9000275-9000405 | Arabidopsis thaliana |
AT4G15840:three_prime_UTR:2 | 48 | Chr4: 9000501-9000548 | Arabidopsis thaliana |
AT4G15840:three_prime_UTR:3 | 364 | Chr4: 9000676-9001039 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
A0A1P8B6W9_ARATH F4JKX0_ARATH | pathway | Protein modification; protein ubiquitination. |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
protein ubiquitination | ECO |
Interactions
Interaction Network
Show the following interaction types:
Reset view
Show in table format
Export graph
- Click on a gene to get more info about it.
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
---|
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...