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Gene : PPD1 A. thaliana

DB identifier  ? AT4G15510 Secondary Identifier  ? locus:2130295
Name  ? PsbP-Domain Protein1 Brief Description  Photosystem II reaction center PsbP family protein
TAIR Computational Description  Photosystem II reaction center PsbP family protein;(source:Araport11)
TAIR Curator Summary  A nuclear-encoded thylakoid lumenal protein that is associated with photosystem I (PSI) but is not an integral subunit of PSI. It is an PSI assembly factor that assists the proper folding and integration of PsaB and PsaA into the thylakoid membrane. It is involved in the assembly of PSI reaction center heterodimer core.
TAIR Short Description  Photosystem II reaction center PsbP family protein
TAIR Aliases  PPD1

0 Gene Rifs

1 Organism

17 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2232  
Location: Chr4:8860462-8862693

Gene models - PPD1 AT4G15510

? Gene models

Transcripts: 5  Exons: 19  Introns: 14 

Overlapping Features

? Genome features that overlap coordinates of this Gene

17 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
PPD1_ARATH-2 PPD1_ARATH PPD1_ARATH-3 developmental stage Highly expressed in very young leaves and then decreases with leaf age.
PPD1_ARATH-2 PPD1_ARATH PPD1_ARATH-3 function Photosystem I assembly factor that assists the proper folding and integration of PsaB and PsaA into the thylakoid membrane.
PPD1_ARATH-2 PPD1_ARATH PPD1_ARATH-3 similarity Belongs to the PsbP family.
PPD1_ARATH-2 PPD1_ARATH PPD1_ARATH-3 subcellular location Associates primarily with stroma-exposed thylakoids.

3 Proteins

Function

Gene Ontology

cellular component
chloroplast thylakoid lumen  ? ECO  
chloroplast stroma  ? ECO  
thylakoid  ? ECO  
chloroplast thylakoid membrane  ? ECO  
photosystem II oxygen evolving complex  ? ECO  
thylakoid lumen  ? ECO  
extrinsic component of membrane  ? ECO  
chloroplast  ? ECO  
molecular function
calcium ion binding  ? ECO  
biological process
photosystem I assembly  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets