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Gene : SDG2 A. thaliana

DB identifier  ? AT4G15180 Secondary Identifier  ? locus:2129755
Name  ? SET domain protein 2 Brief Description  SET domain protein 2
TAIR Computational Description  SET domain protein 2;(source:Araport11)
TAIR Curator Summary  Encodes SET domain containing protein that acts redundantly with ATX4/5 to regulate histone H3-K4 methylation.
TAIR Short Description  SET domain protein 2
TAIR Aliases  ATXR3, SDG2

6 Gene Rifs

1 Organism

17 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 11182  
Location: Chr4:8651406-8662587

Gene models - SDG2 AT4G15180

? Gene models

Transcripts: 1  Exons: 21  Introns: 20 

Overlapping Features

? Genome features that overlap coordinates of this Gene

22 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
ATXR3_ARATH function Histone methyltransferase specifically required for trimethylation of 'Lys-4' of histone H3 (H3K4me3) and is crucial for both sporophyte and gametophyte development (PubMed:20937886, PubMed:21037105). Function as a diurnal 'writer' to counteract the nocturne 'eraser' demethylase activity of JMJ14 thus orchestrating the circadian rythm of histone modifications (e.g. H3K4me3) and modulating the rythmic expression of diurnal target genes; this mechanism relies also on the circadian clock oscillators CCA1 and LHY (PubMed:31429787).
ATXR3_ARATH similarity Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.
ATXR3_ARATH tissue specificity Expressed in roots, leaves, stems and inflorescences.

1 Proteins

Function

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets