help  | faq  | software  | BAR
Hide

Oops!

Error: Could not parse response to GET https://phytozome-next.jgi.doe.gov/phytomine/service/model: "" (0: SyntaxError: Unexpected end of JSON input)
Hide

Oops!

https://bar.utoronto.ca/thalemine/service/ is incorrect
Hide Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.

Gene : AT4G13710 A. thaliana

DB identifier  ? AT4G13710 Secondary Identifier  ? locus:2005487
Brief Description  Pectin lyase-like superfamily protein
TAIR Computational Description  Pectin lyase-like superfamily protein;(source:Araport11)
TAIR Curator Summary  Pectate lyase
TAIR Short Description  Pectin lyase-like superfamily protein
TAIR Aliases  ATPLL25

0 Gene Rifs

1 Organism

9 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 4094  
Location: Chr4:7962428-7966521

Gene models - AT4G13710 AT4G13710

? Gene models

Transcripts: 2  Exons: 15  Introns: 13 

Overlapping Features

? Genome features that overlap coordinates of this Gene

12 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
F4JTS3_ARATH PLY15_ARATH pathway Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 2/5.
F4JTS3_ARATH PLY15_ARATH similarity Belongs to the polysaccharide lyase 1 family.
PLY15_ARATH tissue specificity Expressed in flowers, but not in leaves.

2 Proteins

Function

Gene Ontology

cellular component
No terms in this category.
molecular function
pectate lyase activity  ? ECO  
metal ion binding  ? ECO  
biological process
pectin catabolic process  ? ECO  

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets