help  | faq  | software  | BAR
Hide

Oops!

https://bar.utoronto.ca/thalemine/service/ is incorrect
Hide

Oops!

Error: Could not parse response to GET https://phytozome-next.jgi.doe.gov/phytomine/service/model: "" (0: SyntaxError: Unexpected end of JSON input)
Hide Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.

Gene : MEE57 A. thaliana

DB identifier  ? AT4G13610 Secondary Identifier  ? locus:2140892
Name  ? maternal effect embryo arrest 57 Brief Description  DNA (cytosine-5-)-methyltransferase family protein
TAIR Computational Description  DNA (cytosine-5-)-methyltransferase family protein;(source:Araport11)
TAIR Curator Summary  DNA Methyltransferase regulated by Polycomb group complex during endosperm development.
TAIR Short Description  DNA (cytosine-5-)-methyltransferase family protein
TAIR Aliases  MEE57, MET3

0 Gene Rifs

1 Organism

9 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 6210  
Location: Chr4:7915022-7921231

Gene models - MEE57 AT4G13610

? Gene models

Transcripts: 1  Exons: 13  Introns: 12 

Overlapping Features

? Genome features that overlap coordinates of this Gene

14 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
DNMT3_ARATH function Maintains chromatin CpG methylation that plays a role in genomic imprinting, regulation of embryogenesis and seed viability. Required for proper patterns of CG DNA methylation in dividing cells (By similarity). Required during the endosperm development in seeds.
DNMT3_ARATH similarity Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.

1 Proteins

Function

Gene Ontology

cellular component
nucleus  ? ECO  
molecular function
chromatin binding  ? ECO  
DNA binding  ? ECO  
DNA (cytosine-5-)-methyltransferase activity  ? ECO  
biological process
DNA methylation-dependent constitutive heterochromatin formation  ? ECO  
embryo development ending in seed dormancy  ? ECO  
methylation  ? ECO  

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

6 Data Sets