External Links
- Aracyc
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- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
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- pep2pro
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- Agrisera Antibodies
- ATTED-II
- T-DNA Express
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- AthaMap
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 19, Exons: 16, Five Prime UTRs: 8, mRNAs: 10, Three Prime UTRs: 10, Transposable Elements: 3, Transposon Fragments: 3
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G12990:CDS:6 | 153 | Chr4: 7594687-7594839 | Arabidopsis thaliana |
AT4G12990:CDS:2 | 96 | Chr4: 7595239-7595334 | Arabidopsis thaliana |
AT4G12990:CDS:3 | 291 | Chr4: 7595044-7595334 | Arabidopsis thaliana |
AT4G12990:CDS:7 | 53 | Chr4: 7594620-7594672 | Arabidopsis thaliana |
AT4G12990:CDS:5 | 64 | Chr4: 7594776-7594839 | Arabidopsis thaliana |
AT4G12990:CDS:2.1 | 96 | Chr4: 7595239-7595334 | Arabidopsis thaliana |
AT4G12990:CDS:3.1 | 291 | Chr4: 7595044-7595334 | Arabidopsis thaliana |
AT4G12990:CDS:7.1 | 53 | Chr4: 7594620-7594672 | Arabidopsis thaliana |
AT4G12990:CDS:5.1 | 64 | Chr4: 7594776-7594839 | Arabidopsis thaliana |
AT4G12990:CDS:2.2 | 96 | Chr4: 7595239-7595334 | Arabidopsis thaliana |
AT4G12990:CDS:3.2 | 291 | Chr4: 7595044-7595334 | Arabidopsis thaliana |
AT4G12990:CDS:7.2 | 53 | Chr4: 7594620-7594672 | Arabidopsis thaliana |
AT4G12990:CDS:5.2 | 64 | Chr4: 7594776-7594839 | Arabidopsis thaliana |
AT4G12990:CDS:2.3 | 96 | Chr4: 7595239-7595334 | Arabidopsis thaliana |
AT4G12990:CDS:4 | 2 | Chr4: 7594838-7594839 | Arabidopsis thaliana |
AT4G12990:CDS:1 | 46 | Chr4: 7595824-7595869 | Arabidopsis thaliana |
AT4G12990:CDS:6.1 | 153 | Chr4: 7594687-7594839 | Arabidopsis thaliana |
AT4G12990:CDS:2.4 | 96 | Chr4: 7595239-7595334 | Arabidopsis thaliana |
AT4G12990:CDS:3.3 | 291 | Chr4: 7595044-7595334 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G12990:exon:15 | 610 | Chr4: 7594230-7594839 | Arabidopsis thaliana |
AT4G12990:exon:8 | 1224 | Chr4: 7594776-7595999 | Arabidopsis thaliana |
AT4G12990:exon:4 | 761 | Chr4: 7595239-7595999 | Arabidopsis thaliana |
AT4G12990:exon:16 | 443 | Chr4: 7594230-7594672 | Arabidopsis thaliana |
AT4G12990:exon:9 | 760 | Chr4: 7594776-7595535 | Arabidopsis thaliana |
AT4G12990:exon:13 | 1178 | Chr4: 7594358-7595535 | Arabidopsis thaliana |
AT4G12990:exon:14 | 315 | Chr4: 7594358-7594672 | Arabidopsis thaliana |
AT4G12990:exon:6 | 191 | Chr4: 7595239-7595429 | Arabidopsis thaliana |
AT4G12990:exon:1 | 185 | Chr4: 7595824-7596008 | Arabidopsis thaliana |
AT4G12990:exon:12 | 237 | Chr4: 7594436-7594672 | Arabidopsis thaliana |
AT4G12990:exon:10 | 64 | Chr4: 7594776-7594839 | Arabidopsis thaliana |
AT4G12990:exon:2 | 176 | Chr4: 7595824-7595999 | Arabidopsis thaliana |
AT4G12990:exon:11 | 182 | Chr4: 7594658-7594839 | Arabidopsis thaliana |
AT4G12990:exon:5 | 297 | Chr4: 7595239-7595535 | Arabidopsis thaliana |
AT4G12990:exon:3 | 167 | Chr4: 7595824-7595990 | Arabidopsis thaliana |
AT4G12990:exon:7 | 810 | Chr4: 7594944-7595753 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G12990:five_prime_UTR:5 | 665 | Chr4: 7595335-7595999 | Arabidopsis thaliana |
AT4G12990:five_prime_UTR:3 | 176 | Chr4: 7595824-7595999 | Arabidopsis thaliana |
AT4G12990:five_prime_UTR:8 | 95 | Chr4: 7595335-7595429 | Arabidopsis thaliana |
AT4G12990:five_prime_UTR:2 | 185 | Chr4: 7595824-7596008 | Arabidopsis thaliana |
AT4G12990:five_prime_UTR:1 | 130 | Chr4: 7595870-7595999 | Arabidopsis thaliana |
AT4G12990:five_prime_UTR:7 | 201 | Chr4: 7595335-7595535 | Arabidopsis thaliana |
AT4G12990:five_prime_UTR:4 | 167 | Chr4: 7595824-7595990 | Arabidopsis thaliana |
AT4G12990:five_prime_UTR:6 | 419 | Chr4: 7595335-7595753 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G12990.4 | 1371 | Chr4: 7594230-7595999 |
AT4G12990.2 | 1667 | Chr4: 7594230-7595999 |
AT4G12990.5 | 1268 | Chr4: 7594230-7595999 |
AT4G12990.3 | 1379 | Chr4: 7594230-7595999 |
AT4G12990.7 | 861 | Chr4: 7594358-7596008 |
AT4G12990.6 | 1363 | Chr4: 7594358-7596008 |
AT4G12990.8 | 755 | Chr4: 7594358-7596008 |
AT4G12990.9 | 477 | Chr4: 7594436-7595999 |
AT4G12990.10 | 646 | Chr4: 7594658-7595990 |
AT4G12990.1 | 810 | Chr4: 7594944-7595753 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G12990:three_prime_UTR:8 | 457 | Chr4: 7594230-7594686 | Arabidopsis thaliana |
AT4G12990:three_prime_UTR:10 | 390 | Chr4: 7594230-7594619 | Arabidopsis thaliana |
AT4G12990:three_prime_UTR:9 | 443 | Chr4: 7594230-7594672 | Arabidopsis thaliana |
AT4G12990:three_prime_UTR:2 | 268 | Chr4: 7594776-7595043 | Arabidopsis thaliana |
AT4G12990:three_prime_UTR:6 | 686 | Chr4: 7594358-7595043 | Arabidopsis thaliana |
AT4G12990:three_prime_UTR:7 | 262 | Chr4: 7594358-7594619 | Arabidopsis thaliana |
AT4G12990:three_prime_UTR:5 | 237 | Chr4: 7594436-7594672 | Arabidopsis thaliana |
AT4G12990:three_prime_UTR:3 | 62 | Chr4: 7594776-7594837 | Arabidopsis thaliana |
AT4G12990:three_prime_UTR:4 | 29 | Chr4: 7594658-7594686 | Arabidopsis thaliana |
AT4G12990:three_prime_UTR:1 | 100 | Chr4: 7594944-7595043 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE33195 | 54 | Chr4: 7594195-7594248 | Arabidopsis thaliana |
AT4TE33200 | 2317 | Chr4: 7594249-7596565 | Arabidopsis thaliana |
AT4TE33205 | 111 | Chr4: 7595132-7595242 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE33195:transposon_fragment:1 | 54 | Chr4: 7594195-7594248 | Arabidopsis thaliana |
AT4TE33200:transposon_fragment:2 | 231 | Chr4: 7594249-7594479 | Arabidopsis thaliana |
AT4TE33205:transposon_fragment:1 | 111 | Chr4: 7595132-7595242 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
membrane | ECO |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...