External Links
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G09720:CDS:1 | 53 | Chr4: 6133101-6133153 | Arabidopsis thaliana |
AT4G09720:CDS:2 | 27 | Chr4: 6133247-6133273 | Arabidopsis thaliana |
AT4G09720:CDS:3 | 100 | Chr4: 6133383-6133482 | Arabidopsis thaliana |
AT4G09720:CDS:5 | 147 | Chr4: 6133573-6133719 | Arabidopsis thaliana |
AT4G09720:CDS:6 | 20 | Chr4: 6133808-6133827 | Arabidopsis thaliana |
AT4G09720:CDS:9 | 76 | Chr4: 6134293-6134368 | Arabidopsis thaliana |
AT4G09720:CDS:10 | 146 | Chr4: 6134449-6134594 | Arabidopsis thaliana |
AT4G09720:CDS:11 | 67 | Chr4: 6134893-6134959 | Arabidopsis thaliana |
AT4G09720:CDS:4 | 78 | Chr4: 6133405-6133482 | Arabidopsis thaliana |
AT4G09720:CDS:5.1 | 147 | Chr4: 6133573-6133719 | Arabidopsis thaliana |
AT4G09720:CDS:8 | 81 | Chr4: 6134288-6134368 | Arabidopsis thaliana |
AT4G09720:CDS:10.1 | 146 | Chr4: 6134449-6134594 | Arabidopsis thaliana |
AT4G09720:CDS:11.1 | 67 | Chr4: 6134893-6134959 | Arabidopsis thaliana |
AT4G09720:CDS:4.1 | 78 | Chr4: 6133405-6133482 | Arabidopsis thaliana |
AT4G09720:CDS:5.2 | 147 | Chr4: 6133573-6133719 | Arabidopsis thaliana |
AT4G09720:CDS:8.1 | 81 | Chr4: 6134288-6134368 | Arabidopsis thaliana |
AT4G09720:CDS:10.2 | 146 | Chr4: 6134449-6134594 | Arabidopsis thaliana |
AT4G09720:CDS:11.2 | 67 | Chr4: 6134893-6134959 | Arabidopsis thaliana |
AT4G09720:CDS:1.1 | 53 | Chr4: 6133101-6133153 | Arabidopsis thaliana |
AT4G09720:CDS:2.1 | 27 | Chr4: 6133247-6133273 | Arabidopsis thaliana |
AT4G09720:CDS:3.1 | 100 | Chr4: 6133383-6133482 | Arabidopsis thaliana |
AT4G09720:CDS:5.3 | 147 | Chr4: 6133573-6133719 | Arabidopsis thaliana |
AT4G09720:CDS:8.2 | 81 | Chr4: 6134288-6134368 | Arabidopsis thaliana |
AT4G09720:CDS:10.3 | 146 | Chr4: 6134449-6134594 | Arabidopsis thaliana |
AT4G09720:CDS:11.3 | 67 | Chr4: 6134893-6134959 | Arabidopsis thaliana |
AT4G09720:CDS:1.2 | 53 | Chr4: 6133101-6133153 | Arabidopsis thaliana |
AT4G09720:CDS:2.2 | 27 | Chr4: 6133247-6133273 | Arabidopsis thaliana |
AT4G09720:CDS:3.2 | 100 | Chr4: 6133383-6133482 | Arabidopsis thaliana |
AT4G09720:CDS:5.4 | 147 | Chr4: 6133573-6133719 | Arabidopsis thaliana |
AT4G09720:CDS:6.1 | 20 | Chr4: 6133808-6133827 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G09720:exon:1 | 317 | Chr4: 6132837-6133153 | Arabidopsis thaliana |
AT4G09720:exon:13 | 76 | Chr4: 6134293-6134368 | Arabidopsis thaliana |
AT4G09720:exon:17 | 308 | Chr4: 6134893-6135200 | Arabidopsis thaliana |
AT4G09720:exon:2 | 304 | Chr4: 6132850-6133153 | Arabidopsis thaliana |
AT4G09720:exon:15 | 121 | Chr4: 6134893-6135013 | Arabidopsis thaliana |
AT4G09720:exon:19 | 194 | Chr4: 6135508-6135701 | Arabidopsis thaliana |
AT4G09720:exon:6 | 236 | Chr4: 6133247-6133482 | Arabidopsis thaliana |
AT4G09720:exon:3 | 292 | Chr4: 6132862-6133153 | Arabidopsis thaliana |
AT4G09720:exon:18 | 496 | Chr4: 6134893-6135388 | Arabidopsis thaliana |
AT4G09720:exon:4 | 237 | Chr4: 6132917-6133153 | Arabidopsis thaliana |
AT4G09720:exon:5 | 27 | Chr4: 6133247-6133273 | Arabidopsis thaliana |
AT4G09720:exon:8 | 100 | Chr4: 6133383-6133482 | Arabidopsis thaliana |
AT4G09720:exon:10 | 20 | Chr4: 6133808-6133827 | Arabidopsis thaliana |
AT4G09720:exon:11 | 13 | Chr4: 6133994-6134006 | Arabidopsis thaliana |
AT4G09720:exon:7 | 187 | Chr4: 6133296-6133482 | Arabidopsis thaliana |
AT4G09720:exon:9 | 147 | Chr4: 6133573-6133719 | Arabidopsis thaliana |
AT4G09720:exon:12 | 81 | Chr4: 6134288-6134368 | Arabidopsis thaliana |
AT4G09720:exon:14 | 146 | Chr4: 6134449-6134594 | Arabidopsis thaliana |
AT4G09720:exon:16 | 291 | Chr4: 6134893-6135183 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G09720:five_prime_UTR:1 | 264 | Chr4: 6132837-6133100 | Arabidopsis thaliana |
AT4G09720:five_prime_UTR:2 | 304 | Chr4: 6132850-6133153 | Arabidopsis thaliana |
AT4G09720:five_prime_UTR:4 | 292 | Chr4: 6132862-6133153 | Arabidopsis thaliana |
AT4G09720:five_prime_UTR:6 | 158 | Chr4: 6133247-6133404 | Arabidopsis thaliana |
AT4G09720:five_prime_UTR:3 | 239 | Chr4: 6132862-6133100 | Arabidopsis thaliana |
AT4G09720:five_prime_UTR:5 | 184 | Chr4: 6132917-6133100 | Arabidopsis thaliana |
AT4G09720:five_prime_UTR:7 | 109 | Chr4: 6133296-6133404 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G09720.4 | 1141 | Chr4: 6132837-6135200 |
AT4G09720.5 | 1229 | Chr4: 6132850-6135701 |
AT4G09720.2 | 1398 | Chr4: 6132862-6135388 |
AT4G09720.1 | 1289 | Chr4: 6132862-6135388 |
AT4G09720.3 | 1062 | Chr4: 6132917-6135183 |
AT4G09720.6 | 852 | Chr4: 6133296-6135183 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G09720:three_prime_UTR:3 | 241 | Chr4: 6134960-6135200 | Arabidopsis thaliana |
AT4G09720:three_prime_UTR:1 | 54 | Chr4: 6134960-6135013 | Arabidopsis thaliana |
AT4G09720:three_prime_UTR:5 | 194 | Chr4: 6135508-6135701 | Arabidopsis thaliana |
AT4G09720:three_prime_UTR:4 | 429 | Chr4: 6134960-6135388 | Arabidopsis thaliana |
AT4G09720:three_prime_UTR:2 | 224 | Chr4: 6134960-6135183 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
RAG3A_ARATH-2 RAG3A_ARATH | function | Intracellular vesicle trafficking and protein transport. |
F4JKR6_ARATH RAG3A_ARATH-2 F4JKR7_ARATH A0A178UUR6_ARATH RAG3A_ARATH | similarity | Belongs to the small GTPase superfamily. Rab family. |
Function
Gene Ontology
cellular component | |
---|---|
plasma membrane | ECO |
vacuolar membrane | ECO |
molecular function | |
GTPase activity | ECO |
GTP binding | ECO |
biological process | |
protein transport | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...