External Links
- Aracyc
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- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
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- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNA: 1, CDSs: 18, Exons: 13, Five Prime UTRs: 2, Genes: 2, mRNAs: 3, Three Prime UTRs: 2
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G08320:CDS:1 | 73 | Chr4: 5252853-5252925 | Arabidopsis thaliana |
AT4G08320:CDS:2 | 267 | Chr4: 5253030-5253296 | Arabidopsis thaliana |
AT4G08320:CDS:3 | 137 | Chr4: 5253388-5253524 | Arabidopsis thaliana |
AT4G08320:CDS:4 | 67 | Chr4: 5253604-5253670 | Arabidopsis thaliana |
AT4G08320:CDS:5 | 100 | Chr4: 5253821-5253920 | Arabidopsis thaliana |
AT4G08320:CDS:6 | 164 | Chr4: 5254035-5254198 | Arabidopsis thaliana |
AT4G08320:CDS:7 | 47 | Chr4: 5254341-5254387 | Arabidopsis thaliana |
AT4G08320:CDS:8 | 51 | Chr4: 5254476-5254526 | Arabidopsis thaliana |
AT4G08320:CDS:10 | 375 | Chr4: 5254616-5254990 | Arabidopsis thaliana |
AT4G08320:CDS:1.1 | 73 | Chr4: 5252853-5252925 | Arabidopsis thaliana |
AT4G08320:CDS:2.1 | 267 | Chr4: 5253030-5253296 | Arabidopsis thaliana |
AT4G08320:CDS:3.1 | 137 | Chr4: 5253388-5253524 | Arabidopsis thaliana |
AT4G08320:CDS:4.1 | 67 | Chr4: 5253604-5253670 | Arabidopsis thaliana |
AT4G08320:CDS:5.1 | 100 | Chr4: 5253821-5253920 | Arabidopsis thaliana |
AT4G08320:CDS:6.1 | 164 | Chr4: 5254035-5254198 | Arabidopsis thaliana |
AT4G08320:CDS:7.1 | 47 | Chr4: 5254341-5254387 | Arabidopsis thaliana |
AT4G08320:CDS:8.1 | 51 | Chr4: 5254476-5254526 | Arabidopsis thaliana |
AT4G08320:CDS:9 | 378 | Chr4: 5254613-5254990 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G08320:exon:1 | 286 | Chr4: 5252640-5252925 | Arabidopsis thaliana |
AT4G08320:exon:11 | 585 | Chr4: 5254616-5255200 | Arabidopsis thaliana |
AT4G08320:exon:2 | 191 | Chr4: 5252735-5252925 | Arabidopsis thaliana |
AT4G08320:exon:3 | 267 | Chr4: 5253030-5253296 | Arabidopsis thaliana |
AT4G08320:exon:4 | 137 | Chr4: 5253388-5253524 | Arabidopsis thaliana |
AT4G08320:exon:5 | 67 | Chr4: 5253604-5253670 | Arabidopsis thaliana |
AT4G08320:exon:6 | 100 | Chr4: 5253821-5253920 | Arabidopsis thaliana |
AT4G08320:exon:7 | 164 | Chr4: 5254035-5254198 | Arabidopsis thaliana |
AT4G08320:exon:8 | 47 | Chr4: 5254341-5254387 | Arabidopsis thaliana |
AT4G08320:exon:9 | 51 | Chr4: 5254476-5254526 | Arabidopsis thaliana |
AT4G08320:exon:10 | 588 | Chr4: 5254613-5255200 | Arabidopsis thaliana |
AT4G05395:exon:1 | 272 | Chr4: 5254688-5254959 | Arabidopsis thaliana |
AT4G08330:exon:4 | 643 | Chr4: 5255120-5255762 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G08320:five_prime_UTR:1 | 213 | Chr4: 5252640-5252852 | Arabidopsis thaliana |
AT4G08320:five_prime_UTR:2 | 118 | Chr4: 5252735-5252852 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT4G05395 | AT4G05395 | 272 | Chr4: 5254688-5254959 | A. thaliana | Natural antisense transcript overlaps with AT4G08320;(source:Araport11) | NULL | ||||
AT4G08330 | locus:2137455 | AT4G08330 | 1659 | Chr4: 5255120-5256778 | A. thaliana | hypothetical protein;(source:Araport11) | NULL | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G08320.1 | 1704 | Chr4: 5252640-5255200 |
AT4G08320.2 | 1612 | Chr4: 5252735-5255200 |
AT4G08330.1 | 938 | Chr4: 5255120-5256704 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G08320:three_prime_UTR:1 | 210 | Chr4: 5254991-5255200 | Arabidopsis thaliana |
AT4G08330:three_prime_UTR:2 | 264 | Chr4: 5255120-5255383 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
A0A178V0S9_ARATH A0A178V2R9_ARATH | similarity | Belongs to the SGT family. |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...