External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 23, Exons: 14, Five Prime UTRs: 6, mRNAs: 3, Three Prime UTRs: 3, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G05330:CDS:10 | 282 | Chr4: 2720772-2721053 | Arabidopsis thaliana |
AT4G05330:CDS:9 | 96 | Chr4: 2721139-2721234 | Arabidopsis thaliana |
AT4G05330:CDS:8 | 123 | Chr4: 2721320-2721442 | Arabidopsis thaliana |
AT4G05330:CDS:7 | 148 | Chr4: 2721526-2721673 | Arabidopsis thaliana |
AT4G05330:CDS:6 | 164 | Chr4: 2721759-2721922 | Arabidopsis thaliana |
AT4G05330:CDS:4 | 87 | Chr4: 2722040-2722126 | Arabidopsis thaliana |
AT4G05330:CDS:3 | 6 | Chr4: 2722418-2722423 | Arabidopsis thaliana |
AT4G05330:CDS:10.1 | 282 | Chr4: 2720772-2721053 | Arabidopsis thaliana |
AT4G05330:CDS:9.1 | 96 | Chr4: 2721139-2721234 | Arabidopsis thaliana |
AT4G05330:CDS:8.1 | 123 | Chr4: 2721320-2721442 | Arabidopsis thaliana |
AT4G05330:CDS:7.1 | 148 | Chr4: 2721526-2721673 | Arabidopsis thaliana |
AT4G05330:CDS:6.1 | 164 | Chr4: 2721759-2721922 | Arabidopsis thaliana |
AT4G05330:CDS:5 | 76 | Chr4: 2722040-2722115 | Arabidopsis thaliana |
AT4G05330:CDS:2 | 82 | Chr4: 2722418-2722499 | Arabidopsis thaliana |
AT4G05330:CDS:1 | 40 | Chr4: 2722640-2722679 | Arabidopsis thaliana |
AT4G05330:CDS:10.2 | 282 | Chr4: 2720772-2721053 | Arabidopsis thaliana |
AT4G05330:CDS:9.2 | 96 | Chr4: 2721139-2721234 | Arabidopsis thaliana |
AT4G05330:CDS:8.2 | 123 | Chr4: 2721320-2721442 | Arabidopsis thaliana |
AT4G05330:CDS:7.2 | 148 | Chr4: 2721526-2721673 | Arabidopsis thaliana |
AT4G05330:CDS:6.2 | 164 | Chr4: 2721759-2721922 | Arabidopsis thaliana |
AT4G05330:CDS:5.1 | 76 | Chr4: 2722040-2722115 | Arabidopsis thaliana |
AT4G05330:CDS:2.1 | 82 | Chr4: 2722418-2722499 | Arabidopsis thaliana |
AT4G05330:CDS:1.1 | 40 | Chr4: 2722640-2722679 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G05330:exon:14 | 561 | Chr4: 2720493-2721053 | Arabidopsis thaliana |
AT4G05330:exon:6 | 87 | Chr4: 2722040-2722126 | Arabidopsis thaliana |
AT4G05330:exon:2 | 62 | Chr4: 2723065-2723126 | Arabidopsis thaliana |
AT4G05330:exon:13 | 544 | Chr4: 2720510-2721053 | Arabidopsis thaliana |
AT4G05330:exon:1 | 150 | Chr4: 2723065-2723214 | Arabidopsis thaliana |
AT4G05330:exon:12 | 529 | Chr4: 2720525-2721053 | Arabidopsis thaliana |
AT4G05330:exon:11 | 96 | Chr4: 2721139-2721234 | Arabidopsis thaliana |
AT4G05330:exon:10 | 123 | Chr4: 2721320-2721442 | Arabidopsis thaliana |
AT4G05330:exon:9 | 148 | Chr4: 2721526-2721673 | Arabidopsis thaliana |
AT4G05330:exon:8 | 164 | Chr4: 2721759-2721922 | Arabidopsis thaliana |
AT4G05330:exon:7 | 76 | Chr4: 2722040-2722115 | Arabidopsis thaliana |
AT4G05330:exon:5 | 82 | Chr4: 2722418-2722499 | Arabidopsis thaliana |
AT4G05330:exon:4 | 79 | Chr4: 2722640-2722718 | Arabidopsis thaliana |
AT4G05330:exon:3 | 104 | Chr4: 2722915-2723018 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G05330:five_prime_UTR:6 | 76 | Chr4: 2722424-2722499 | Arabidopsis thaliana |
AT4G05330:five_prime_UTR:5 | 79 | Chr4: 2722640-2722718 | Arabidopsis thaliana |
AT4G05330:five_prime_UTR:2 | 62 | Chr4: 2723065-2723126 | Arabidopsis thaliana |
AT4G05330:five_prime_UTR:1 | 150 | Chr4: 2723065-2723214 | Arabidopsis thaliana |
AT4G05330:five_prime_UTR:4 | 39 | Chr4: 2722680-2722718 | Arabidopsis thaliana |
AT4G05330:five_prime_UTR:3 | 104 | Chr4: 2722915-2723018 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G05330.2 | 1402 | Chr4: 2720493-2723126 |
AT4G05330.1 | 1462 | Chr4: 2720510-2723214 |
AT4G05330.3 | 1401 | Chr4: 2720525-2723018 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G05330:three_prime_UTR:3 | 279 | Chr4: 2720493-2720771 | Arabidopsis thaliana |
AT4G05330:three_prime_UTR:2 | 262 | Chr4: 2720510-2720771 | Arabidopsis thaliana |
AT4G05330:three_prime_UTR:1 | 247 | Chr4: 2720525-2720771 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE12690 | 190 | Chr4: 2723118-2723307 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE12690:transposon_fragment:1 | 190 | Chr4: 2723118-2723307 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
AGD13_ARATH | function | GTPase-activating protein (GAP) for ADP ribosylation factor (ARF). |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
phospholipid binding | ECO |
GTPase activator activity | ECO |
metal ion binding | ECO |
biological process | |
pollen development | ECO |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...