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Gene : AT4G04670 A. thaliana

DB identifier  ? AT4G04670 Secondary Identifier  ? locus:2135069
Brief Description  Met-10 like family protein / kelch repeat-containing protein
TAIR Computational Description  Met-10+ like family protein / kelch repeat-containing protein;(source:Araport11)
TAIR Curator Summary  NULL
TAIR Short Description  Met-10+ like family protein / kelch repeat-containing protein
TAIR Aliases  AtTRM5c, TRM5c

0 Gene Rifs

1 Organism

7 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 4787  
Location: Chr4:2367434-2372220

Gene models - AT4G04670 AT4G04670

? Gene models

Transcripts: 1  Exons: 9  Introns: 8 

Overlapping Features

? Genome features that overlap coordinates of this Gene

10 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
TYW23_ARATH function S-adenosyl-L-methionine-dependent transferase that acts as a component of the wybutosine biosynthesis pathway. Wybutosine is a hyper modified guanosine with a tricyclic base found at the 3'-position adjacent to the anticodon of eukaryotic phenylalanine tRNA (By similarity).
TYW23_ARATH pathway tRNA modification; wybutosine-tRNA(Phe) biosynthesis.
TYW23_ARATH similarity In the C-terminal section; belongs to the class I-like SAM-binding methyltransferase superfamily. TRM5/TYW2 family.
TYW23_ARATH similarity In the N-terminal section; belongs to the TYW3 family.

1 Proteins

Function

Gene Ontology

cellular component
No terms in this category.
molecular function
methyltransferase activity  ? ECO  
tRNA 4-demethylwyosine alpha-amino-alpha-carboxypropyltransferase activity  ? ECO  
biological process
wybutosine biosynthetic process  ? ECO  
methylation  ? ECO  

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

6 Data Sets