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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G03410:CDS:1 | 336 | Chr4: 1501907-1502242 | Arabidopsis thaliana |
AT4G03410:CDS:2 | 141 | Chr4: 1502362-1502502 | Arabidopsis thaliana |
AT4G03410:CDS:3 | 114 | Chr4: 1502579-1502692 | Arabidopsis thaliana |
AT4G03410:CDS:4 | 174 | Chr4: 1502771-1502944 | Arabidopsis thaliana |
AT4G03410:CDS:5 | 116 | Chr4: 1503047-1503162 | Arabidopsis thaliana |
AT4G03410:CDS:7 | 205 | Chr4: 1503299-1503503 | Arabidopsis thaliana |
AT4G03410:CDS:1.1 | 336 | Chr4: 1501907-1502242 | Arabidopsis thaliana |
AT4G03410:CDS:2.1 | 141 | Chr4: 1502362-1502502 | Arabidopsis thaliana |
AT4G03410:CDS:3.1 | 114 | Chr4: 1502579-1502692 | Arabidopsis thaliana |
AT4G03410:CDS:4.1 | 174 | Chr4: 1502771-1502944 | Arabidopsis thaliana |
AT4G03410:CDS:5.1 | 116 | Chr4: 1503047-1503162 | Arabidopsis thaliana |
AT4G03410:CDS:6 | 67 | Chr4: 1503299-1503365 | Arabidopsis thaliana |
AT4G03410:CDS:8 | 6 | Chr4: 1503481-1503486 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G03400:exon:1 | 935 | Chr4: 1500665-1501599 | Arabidopsis thaliana |
AT4G03410:exon:7 | 263 | Chr4: 1503299-1503561 | Arabidopsis thaliana |
AT4G03410:exon:1 | 1075 | Chr4: 1501168-1502242 | Arabidopsis thaliana |
AT4G03410:exon:2 | 141 | Chr4: 1502362-1502502 | Arabidopsis thaliana |
AT4G03410:exon:3 | 114 | Chr4: 1502579-1502692 | Arabidopsis thaliana |
AT4G03410:exon:4 | 174 | Chr4: 1502771-1502944 | Arabidopsis thaliana |
AT4G03410:exon:5 | 116 | Chr4: 1503047-1503162 | Arabidopsis thaliana |
AT4G03410:exon:6 | 67 | Chr4: 1503299-1503365 | Arabidopsis thaliana |
AT4G03410:exon:8 | 219 | Chr4: 1503481-1503699 | Arabidopsis thaliana |
AT4G03405:exon:1 | 72 | Chr4: 1501607-1501678 | Arabidopsis thaliana |
AT4G03415:exon:10 | 750 | Chr4: 1503492-1504241 | Arabidopsis thaliana |
AT4G03415:exon:9 | 669 | Chr4: 1503573-1504241 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G03400:five_prime_UTR:1 | 935 | Chr4: 1500665-1501599 | Arabidopsis thaliana |
AT4G03410:five_prime_UTR:1 | 739 | Chr4: 1501168-1501906 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT4G03400 | locus:2125571 | DFL2 | DWARF IN LIGHT 2 | 4064 | Chr4: 1497536-1501599 | A. thaliana | Auxin-responsive GH3 family protein;(source:Araport11) | Encodes a GH3-related gene involved in red light-specific hypocotyl elongation. Analysis of sense and antisense transgenic plants suggests that DFL2 is located downstream of red light signal transduction and determines the degree of hypocotyl elongation. | Auxin-responsive GH3 family protein | DFL2, GH3-10 |
AT4G03405 | locus:1005716375 | AT4G03405 | 72 | Chr4: 1501607-1501678 | A. thaliana | pre-tRNA tRNA-Gln (anticodon: CTG);(source:Araport11, TAIR10) | NULL | pre-tRNA | ||
AT4G03415 | locus:504955459 | PP2C52 | 2C-type protein phosphatase 52 | 3044 | Chr4: 1503492-1506535 | A. thaliana | Protein phosphatase 2C family protein;(source:Araport11) | Encodes a myristoylated 2C-type protein phosphatase that interacts with AGB1 and is localized to the plasma membrane. | Protein phosphatase 2C family protein | PP2C52 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G03400.1 | 3518 | Chr4: 1497536-1501599 |
AT4G03410.2 | 1883 | Chr4: 1501168-1503561 |
AT4G03410.1 | 1906 | Chr4: 1501168-1503699 |
AT4G03415.3 | 1815 | Chr4: 1503492-1506535 |
AT4G03415.2 | 2432 | Chr4: 1503573-1506460 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G03410:three_prime_UTR:2 | 58 | Chr4: 1503504-1503561 | Arabidopsis thaliana |
AT4G03410:three_prime_UTR:1 | 213 | Chr4: 1503487-1503699 | Arabidopsis thaliana |
AT4G03415:three_prime_UTR:3 | 297 | Chr4: 1503492-1503788 | Arabidopsis thaliana |
AT4G03415:three_prime_UTR:2 | 216 | Chr4: 1503573-1503788 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
Q5XEV3_ARATH F4JI90_ARATH | similarity | Belongs to the peroxisomal membrane protein PXMP2/4 family. |
Function
Gene Ontology
cellular component | |
---|---|
membrane | ECO |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
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Expression
Co-expression
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Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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