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Gene : RBP-DR1 A. thaliana

DB identifier  ? AT4G03110 Secondary Identifier  ? locus:2139340
Name  ? RNA-binding protein-defense related 1 Brief Description  RNA-binding protein-defense related 1
TAIR Computational Description  RNA-binding protein-defense related 1;(source:Araport11)
TAIR Curator Summary  Encodes a putative RNA-binding protein that is located in the cytoplasm and is involved in the hypersensitive response and positively regulates salicylic acid-mediated immunity.
TAIR Short Description  RNA-binding protein-defense related 1
TAIR Aliases  AtBRN1, AtRBP-DR1, BRN1, RBP-DR1

2 Gene Rifs

1 Organism

14 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 3442  
Location: Chr4:1376306-1379747 reverse strand

Gene models - RBP-DR1 AT4G03110

? Gene models

Transcripts: 3  Exons: 25  Introns: 22 

Overlapping Features

? Genome features that overlap coordinates of this Gene

16 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
BRN1L_ARATH-2 BRN1L_ARATH function RNA-binding protein involved in the regulation of flowering time. Acts as a repressor of the activity of SOC1, a transcriptional activator of flowering time. Binds to the 3'-UTR of SOC1 mRNA in the cytoplasm and participates in SOC1 mRNA decay, mediated by the distal region of the SOC1 3'-UTR (PubMed:23437850). Acts as a positive regulator of salicylic acid (SA)-mediated immunity. May act on SA signaling-related genes at a post-transcriptional level (PubMed:20636102).
BRN1L_ARATH-2 BRN1L_ARATH tissue specificity Highly expressed in stems and cauline leaves, and at lower levels in siliques, flowers, roots and rosette leaves.

2 Proteins

Function

Gene Ontology

cellular component
cytosol  ? ECO  
ribonucleoprotein complex  ? ECO  
cytoplasm  ? ECO  
molecular function
mRNA binding  ? ECO  
biological process
plant-type hypersensitive response  ? ECO  
regulation of photoperiodism, flowering  ? ECO  
positive regulation of salicylic acid mediated signaling pathway  ? ECO  
mRNA catabolic process  ? ECO  
flower development  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

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Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets